View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261-INSERTION-16 (Length: 611)
Name: NF0261-INSERTION-16
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-16 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Original strand, 40740909 - 40741502
Alignment:
| Q |
8 |
aaaacatggtttcatatggaatcaaacaggtctctgtgatgcccttttgtcttctctatacaattttcctcgcaacccatctttggttcttgctttagta |
107 |
Q |
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| T |
40740909 |
aaaacatggtttcatatggaaccaaacaggtctctgtgatgcccttttgtcttctctatacaattttcctcgcaacccatctttggttcttgctttagta |
40741008 |
T |
|
| Q |
108 |
caatattggtctccaaaaaccaacacttttgtttttccttggggtgaggcaaccatcacacttgaagatgttatgattctcggtggattttcagtccttg |
207 |
Q |
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| T |
40741009 |
caatattggtctccaaaaaccaacacttttgtttttccttggggtgaagcaaccatcacatttgaagatgttatgattctcggtggattttcagtccttg |
40741108 |
T |
|
| Q |
208 |
gtgaacccgtaacactttcgctttcttctgatttgctttcaatcgaagctaaattgatcgagattcgaaggagtatgtcgaaaaacaagtccaaaaaggc |
307 |
Q |
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| T |
40741109 |
gtgaaccggtaacactttcgctttcttctgatttgctttcaatcgaagctaaattgatcgagattcgaaggagtatgtcgaaaaacaagtccaaaaaggc |
40741208 |
T |
|
| Q |
308 |
agatcataatgcttggttaaagtttttcaaagaggggttagaagcagaaagtgacaaactttatgaaattgagcatgtgggttttctttgtttatggtta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40741209 |
agatcataatgcttggttaaagtttttcaaagaggggttagaagcagaaagtgacaaactttttgaaattgagcatgtgggttttctttgtttatggtta |
40741308 |
T |
|
| Q |
408 |
tcaaggttcgtttttccttcattttctgattctgttatcgacccgcgtgtttttcccaattggctattcatttatctcaaggtacaagaatggctcttgc |
507 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40741309 |
tcaaggtttgtttttccttcattttctgattctgttatcgacccgcgtgttttt-ccaatt-gctattcatttatctcaaggtacaagaatggctcttgc |
40741406 |
T |
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| Q |
508 |
acccttctgttcttgccagtattttatcataatttgagttttgctttaaagaaaaactagtttctttcatctgtggaaggatttgaattttgaatgttaa |
607 |
Q |
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| |||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
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| T |
40741407 |
a-ccttctgttcttgctagta-tttatcataatttgactttt--cttaaagaaaaactagtttc-ttcatctgtgg-aggatttgaa-tttgaatgttaa |
40741499 |
T |
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