View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0261-INSERTION-17 (Length: 365)
Name: NF0261-INSERTION-17
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-17 |
 | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0048 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 80589 - 80870
Alignment:
| Q |
6 |
cacttgtga-cttcagtggctaacttatctacttcaagatcttcaaatctctttcattcagccatctcttctttattgtgattgtcagtctgcaagacat |
104 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80589 |
cacttgtgaacttcagtggctcacttatctacttcaagatcttcaaatctctttcattcagccatctcttctttattgtgattgtcagtctgcaagacat |
80688 |
T |
|
| Q |
105 |
attgctttgaatccctattttcatgaaagaataaagcatattgatatagattgtcacgttgtacgg-aaaaactttaggctggtttattccatcttcttc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
80689 |
attgctttgaatccctattttcatgaaagaataaagcatattgatatagattgtcacgttgtacggaaaaaacttcaggctggtttattccatcttcttc |
80788 |
T |
|
| Q |
204 |
ctattagttctgcaaatcagttagcagatgttttcacc-aagctcttgaa-ctgca--cttttgcaagcttcactccaagct |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
80789 |
ctattagttctgcaaatcagttagcagatgttttcaccaaagctcttgaacctgcaactttttgcaagcttcactccaagct |
80870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 3813698 - 3814014
Alignment:
| Q |
6 |
cacttgtga-cttcagtggctaacttatctacttcaagatcttcaaatctctttcattcagccatctcttctttattgtgattgtcagtctgcaagacat |
104 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3813698 |
cacttgtgaacttcagtggctcacttatctacttcaagatcttcaaatctctttgattcaaccatctcttctttattgtgatagtcagtctgcaagacat |
3813797 |
T |
|
| Q |
105 |
attgctttgaatccctattttcatgaaagaataaagcatattgatatagattgtcacgttgtacgg-aaaaactttaggctggtttattccatcttcttc |
203 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
3813798 |
attgctttgaatcccacttttcatgaaagaacaaagcatattgatatcgattgtcatgttgtacggcaacaacttcaggctggtttattccatcttcttc |
3813897 |
T |
|
| Q |
204 |
ctattagttctgcaaatcagttagcagatgttttcacc-aagctcttgaa-ctgca--cttttgcaagcttcactccaagct-tgagtgatg-acattca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
3813898 |
ctattagttctgcaaatcagttagcagattttttcaccaaagctcttgaacctgcaattttttgcaagcttcactccaagctcggagtgatgaacattca |
3813997 |
T |
|
| Q |
298 |
ctctccatctggagggg |
314 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
3813998 |
ctctccagcttgagggg |
3814014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 41407865 - 41408181
Alignment:
| Q |
6 |
cacttgtga-cttcagtggctaacttatctacttcaagatcttcaaatctctttcattcagccatctcttctttattgtgattgtcagtctgcaagacat |
104 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41407865 |
cacttgtgaacttcagtggctcacttatcttcttcaagatcttcaaatctctttcattcaaccatctcttctttattgtgatagtcagtctgcaagacat |
41407964 |
T |
|
| Q |
105 |
attgctttgaatccctattttcatgaaagaataaagcatattgatatagattgtcacgttgtacgg-aaaaactttaggctggtttattccatcttcttc |
203 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||| || ||||| ||||||| |||||||||||||||| |
|
|
| T |
41407965 |
attgctttaaatcccacttttcatgaaagaacaaagcatattgatatcgattgtcatgttgtacggcaacaacttcaggctggcttattccatcttcttc |
41408064 |
T |
|
| Q |
204 |
ctattagttctgcaaatcagttagcagatgttttcacc-aagctcttgaa-ctgca--cttttgcaagcttcactccaagct-tgagtgatg-acattca |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
41408065 |
ctattagttctgcaaatcagttagctgattttttcaccaaagctcttgaatctgcaactttttgcaagcttcactccaagctcggagtgatgaacattca |
41408164 |
T |
|
| Q |
298 |
ctctccatctggagggg |
314 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
41408165 |
ctctccagcttgagggg |
41408181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 39399683 - 39399999
Alignment:
| Q |
6 |
cacttgtga-cttcagtggctaacttatctacttcaagatcttcaaatctctttcattcagccatctcttctttattgtgattgtcagtctgcaagacat |
104 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39399683 |
cacttgtgaacttcagtggctcacttatcttcttcaagatcttcaaatctctttcattcaaccatctcttctttattgtgatagtcagtctgcaagacat |
39399782 |
T |
|
| Q |
105 |
attgctttgaatccctattttcatgaaagaataaagcatattgatatagattgtcacgttgtacgg-aaaaactttaggctggtttattccatcttcttc |
203 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||| || ||||| | ||||| |||||||||||||||| |
|
|
| T |
39399783 |
attgctttaaatcccacttttcatgaaagaacaaagcatattgatatcgattgtcatgttgtacggcaacaacttcatgctggcttattccatcttcttc |
39399882 |
T |
|
| Q |
204 |
ctattagttctgcaaatcagttagcagatgttttcacc-aagctcttgaa-ctgca--cttttgcaagcttcactccaagct-tgagtgatg-acattca |
297 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
39399883 |
ctattagttttgcaaatcagttagctgattttttcaccaaagctcttgaacctgcaactttttgcaagcttcactccaagctcggagtgatgaacattca |
39399982 |
T |
|
| Q |
298 |
ctctccatctggagggg |
314 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
39399983 |
ctctccagcttgagggg |
39399999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 570 times since January 2019
Visitors: 2567