View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0261-INSERTION-19 (Length: 178)
Name: NF0261-INSERTION-19
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-19 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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| [»] chr6 (12 HSPs) |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 3087816 - 3087993
Alignment:
| Q |
1 |
gacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087816 |
gacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaac |
3087915 |
T |
|
| Q |
101 |
ttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatg |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3087916 |
ttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatg |
3087993 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 3517 - 3402
Alignment:
| Q |
63 |
gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
162 |
Q |
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|||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||| |||||| |||||||| |
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| T |
3517 |
gaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccag |
3418 |
T |
|
| Q |
163 |
catcggcagagtcatg |
178 |
Q |
| |
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|| |||||||||||| |
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| T |
3417 |
cagtggcagagtcatg |
3402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4623378 - 4623555
Alignment:
| Q |
1 |
gacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaac |
100 |
Q |
| |
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||||||| ||||| | |||| ||||||| ||| || |||||| ||| |||||| ||||| || |||| || ||||||||||||| |||||||||| | |
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| T |
4623378 |
gacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaattgggagtgcatgctcttcagcagc |
4623477 |
T |
|
| Q |
101 |
ttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatg |
178 |
Q |
| |
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|||||| ||||||| ||||||| |||| | |||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
4623478 |
ttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatg |
4623555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 4298509 - 4298392
Alignment:
| Q |
47 |
acatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaact |
146 |
Q |
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|
||||||||| ||||| ||||||||| ||||||||||||| ||||| ||| ||||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
4298509 |
acatgcactagctggacaaaagagaataattgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaact |
4298410 |
T |
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| Q |
147 |
ggtggaataagaccagca |
164 |
Q |
| |
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||||| | |||||||||| |
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| T |
4298409 |
ggtggtacaagaccagca |
4298392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 4259233 - 4259072
Alignment:
| Q |
1 |
gacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaac |
100 |
Q |
| |
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||||||| ||||| | |||||||||||| ||| || |||||| ||| |||||| ||||| || |||| || ||||||||||||| |||||||||| | |
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| T |
4259233 |
gacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaagaaaacaattgggagtgcatgctcttcagcagc |
4259134 |
T |
|
| Q |
101 |
ttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
162 |
Q |
| |
|
|||||| |||||| ||||||| |||||| |||||||||||||| ||||||| || ||||| |
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| T |
4259133 |
ttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccag |
4259072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 4255680 - 4255544
Alignment:
| Q |
17 |
tgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggc |
116 |
Q |
| |
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|||||| ||||| |||| || ||||| |||||||| | |||| |||| ||||| ||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
4255680 |
tgtacggaagtgtaaagcagagaagaacatacatgcaatatctggggaaaggagaacaattgggagtgcatgctcttcagcagcttgtatggtaaatgac |
4255581 |
T |
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| Q |
117 |
atgtaaaaatcagctactaagcaagtaactggtggaa |
153 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||| |
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| T |
4255580 |
atgtaacaatcagaaactaagcaagtaactagtggaa |
4255544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4627221 - 4627398
Alignment:
| Q |
1 |
gacctttgtcaaatattgtacgaaagtggaaagtagttaagaagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaac |
100 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||| ||| ||||| ||||||||| | | ||||||||| ||||||||||||| ||||||||| | |
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|
| T |
4627221 |
gacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaattgggagtgcatgttcttcagcagc |
4627320 |
T |
|
| Q |
101 |
ttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcatg |
178 |
Q |
| |
|
|||||||||||||| ||| || |||| | ||||||||||||||||||| || |||||||||| ||| |||||||| |
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|
| T |
4627321 |
ttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcatg |
4627398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 4471050 - 4471160
Alignment:
| Q |
63 |
gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
162 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| | | || ||||||||||||||| |||||| | || |||||||||||| || |||||||||| |
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| T |
4471050 |
gaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagaccag |
4471149 |
T |
|
| Q |
163 |
catcggcagag |
173 |
Q |
| |
|
|| ||||||| |
|
|
| T |
4471150 |
cagtggcagag |
4471160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 4266052 - 4265943
Alignment:
| Q |
63 |
gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
162 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||| | | ||| ||||| ||||||||| |||| | || |||||||||| ||||||||||| |||| |
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|
| T |
4266052 |
gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccat |
4265953 |
T |
|
| Q |
163 |
catcggcaga |
172 |
Q |
| |
|
||| |||||| |
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|
| T |
4265952 |
cattggcaga |
4265943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 4481977 - 4482113
Alignment:
| Q |
42 |
aagttacatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaag |
141 |
Q |
| |
|
|||| |||||||||| | || |||||||||| ||||||||||||| ||||| ||| | | || |||||||||||||| |||||| |||||||||| |
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|
| T |
4481977 |
aagtaacatgcactgaccggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaag |
4482076 |
T |
|
| Q |
142 |
taactggtggaataagaccagcatcggcagagtcatg |
178 |
Q |
| |
|
| ||||| || |||| ||||||| |||||| ||||| |
|
|
| T |
4482077 |
tgactggggggataataccagcagtggcagattcatg |
4482113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 4575600 - 4575700
Alignment:
| Q |
75 |
attgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagt |
174 |
Q |
| |
|
|||||||| |||| ||||||||| | | || |||||||||||||| |||||| ||||||||||| ||||| || |||||||||||| |||||||| |
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|
| T |
4575600 |
attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagt |
4575699 |
T |
|
| Q |
175 |
c |
175 |
Q |
| |
|
| |
|
|
| T |
4575700 |
c |
4575700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 4503241 - 4503174
Alignment:
| Q |
110 |
aaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtcat |
177 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
4503241 |
aaatggcatgttgcaatcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcat |
4503174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 4561840 - 4561907
Alignment:
| Q |
108 |
gtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcagagtc |
175 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||| || |||||||||||| ||||||||| |
|
|
| T |
4561840 |
gtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcagagtc |
4561907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 4489192 - 4489078
Alignment:
| Q |
63 |
gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
162 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| | | || ||||||| ||| | |||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
4489192 |
gaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaactggagggataagaccag |
4489093 |
T |
|
| Q |
163 |
catcggcagagtcat |
177 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4489092 |
cagtagcagagtcat |
4489078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 2464 - 2340
Alignment:
| Q |
48 |
catgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactg |
147 |
Q |
| |
|
|||||||| |||| ||| | ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||| ||||||| ||| |||| |
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|
| T |
2464 |
catgcactacctggcgaataaagaaggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactg |
2365 |
T |
|
| Q |
148 |
gtggaataagaccagcatcggcaga |
172 |
Q |
| |
|
| || |||||||||| || |||||| |
|
|
| T |
2364 |
gagggataagaccagaattggcaga |
2340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 20862787 - 20862700
Alignment:
| Q |
75 |
attgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag |
162 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||| || ||||| |||||||||||||| || || |||||||||| |
|
|
| T |
20862787 |
attgggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccag |
20862700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 24104273 - 24104337
Alignment:
| Q |
108 |
gtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccagcatcggcaga |
172 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||| ||||||||||| |||| ||| |||||| |
|
|
| T |
24104273 |
gtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaataacaccatcattggcaga |
24104337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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