View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0261-INSERTION-21 (Length: 315)

Name: NF0261-INSERTION-21
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0261-INSERTION-21
NF0261-INSERTION-21
[»] chr3 (8 HSPs)
chr3 (53-315)||(1727360-1727622)
chr3 (161-315)||(15669186-15669337)
chr3 (1-38)||(1728979-1729016)
chr3 (175-220)||(13147007-13147052)
chr3 (178-220)||(15841106-15841148)
chr3 (175-220)||(1061431-1061476)
chr3 (175-220)||(12240464-12240509)
chr3 (175-220)||(18004834-18004879)
[»] chr7 (7 HSPs)
chr7 (165-281)||(24832055-24832171)
chr7 (7-53)||(13877030-13877076)
chr7 (4-53)||(16549220-16549269)
chr7 (4-53)||(16616393-16616442)
chr7 (71-129)||(27289231-27289289)
chr7 (175-220)||(13177379-13177424)
chr7 (10-54)||(14143533-14143577)
[»] chr2 (3 HSPs)
chr2 (175-220)||(24804576-24804621)
chr2 (7-53)||(28704374-28704420)
chr2 (4-56)||(26443874-26443926)
[»] chr1 (4 HSPs)
chr1 (53-150)||(27518805-27518902)
chr1 (175-220)||(19162628-19162673)
chr1 (175-220)||(22652536-22652581)
chr1 (7-52)||(17718765-17718810)
[»] scaffold0084 (1 HSPs)
scaffold0084 (7-53)||(46202-46248)
[»] chr8 (6 HSPs)
chr8 (7-53)||(17012338-17012384)
chr8 (7-53)||(17544817-17544863)
chr8 (7-53)||(45563804-45563850)
chr8 (175-228)||(23802576-23802629)
chr8 (175-220)||(3840826-3840871)
chr8 (175-220)||(23790529-23790574)
[»] chr4 (4 HSPs)
chr4 (7-53)||(15867203-15867249)
chr4 (83-130)||(39042706-39042753)
chr4 (7-53)||(39042594-39042640)
chr4 (10-51)||(17244478-17244519)
[»] scaffold0382 (2 HSPs)
scaffold0382 (175-220)||(4230-4275)
scaffold0382 (175-220)||(12613-12658)
[»] scaffold0211 (1 HSPs)
scaffold0211 (175-220)||(2629-2674)
[»] chr6 (4 HSPs)
chr6 (175-220)||(17611499-17611544)
chr6 (81-130)||(12349486-12349535)
chr6 (175-220)||(17780873-17780918)
chr6 (175-220)||(22383858-22383903)
[»] scaffold0047 (1 HSPs)
scaffold0047 (10-53)||(5985-6028)
[»] scaffold0183 (1 HSPs)
scaffold0183 (7-53)||(7989-8035)
[»] scaffold0161 (3 HSPs)
scaffold0161 (10-52)||(13243-13285)
scaffold0161 (10-52)||(17916-17958)
scaffold0161 (10-52)||(20854-20896)
[»] scaffold0037 (1 HSPs)
scaffold0037 (7-53)||(74999-75045)
[»] scaffold0758 (1 HSPs)
scaffold0758 (7-44)||(2083-2120)
[»] scaffold0010 (1 HSPs)
scaffold0010 (175-220)||(112857-112902)
[»] chr5 (3 HSPs)
chr5 (175-220)||(13531066-13531111)
chr5 (175-220)||(23485971-23486016)
chr5 (175-220)||(25182199-25182244)
[»] scaffold0892 (1 HSPs)
scaffold0892 (176-220)||(1346-1390)
[»] scaffold0016 (1 HSPs)
scaffold0016 (175-223)||(197574-197622)
[»] scaffold0012 (1 HSPs)
scaffold0012 (175-223)||(135591-135639)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 53 - 315
Target Start/End: Complemental strand, 1727622 - 1727360
Alignment:
Q  53 ctttcagtgttaatgtttggaaaatatgcttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgactgaagcgttggttctcccataaa 152  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  1727622 ctttcagtgttaatgtttggaaaatgtgcttttctcttgtcatgtgtcatgagtaaccactgtccaggtaccatgactgaagcgttggttctcccataaa 1727523  T
Q  153 gtgtttctgtagcatagaaaatttcagacttaggtacacatatattcatgggttctttggggttagttatgaaggacttttccttcttcagaaccttagg 252  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  1727522 gtgtttctgtagcatataaaatttcagacttaggtacacatattttcatgggttctttggggttagctctgaaggacttttccttcttcagaactttagg 1727423  T
Q  253 cttcaagatatgcggcttagaatcattcaagacttttggtttaaaggttttaggtcttgaatt 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1727422 cttcaagatatgtggcttagaatcattcaagacttttggtttaaaggttttaggtcttgaatt 1727360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 15669337 - 15669186
Alignment:
Q  161 gtagcatagaaaatttcagacttaggtacacatatattcatgggttctttggggttagttatgaaggacttttccttcttcagaaccttaggcttcaaga 260  Q
    |||||||||||||||| ||||||| |||| ||||| ||||||||| |||||| ||| ||| | ||| | |||||||||   ||||||||||||||||||     
T  15669337 gtagcatagaaaattttagacttatgtacccatattttcatgggtcctttggtgtttgttctaaagtatttttccttc---agaaccttaggcttcaagc 15669241  T
Q  261 tatgcggcttagaatcattcaagacttttggtttaaaggttttaggtcttgaatt 315  Q
    |||  || ||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  15669240 tatatggattagaatcattgaagacttttggtttaaaagttttaggccttgaatt 15669186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1729016 - 1728979
Alignment:
Q  1 tttttgatagagatagaagaattaccaatagttcatgt 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1729016 tttttgatagagatagaagaattaccaatagtccatgt 1728979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 13147007 - 13147052
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  13147007 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 13147052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 15841106 - 15841148
Alignment:
Q  178 agacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||    
T  15841106 agacttaggtacccatatcttcatgggtcctttggggttagtt 15841148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 1061431 - 1061476
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  1061431 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 1061476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 12240509 - 12240464
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    |||||| |||||||| ||||| |||||||||||||| |||||||||    
T  12240509 ttcagatttaggtacccatatcttcatgggttcttttgggttagtt 12240464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 18004834 - 18004879
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    |||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  18004834 ttcagatttaggtacccatatcttcatgggtcctttggggttagtt 18004879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 281
Target Start/End: Original strand, 24832055 - 24832171
Alignment:
Q  165 catagaaaatttcagacttaggtacacatatattcatgggttctttggggttagttatgaaggacttttccttcttcagaaccttaggcttcaagatatg 264  Q
    ||||||||||||||||| | ||||| ||||| ||||||||| |||||||||||||| | ||||| |||||||| |||| | | |||||||||||| ||||    
T  24832055 catagaaaatttcagacgtgggtacccatattttcatgggtactttggggttagttctaaaggaattttcctttttcatacctttaggcttcaagctatg 24832154  T
Q  265 cggcttagaatcattca 281  Q
      ||||  |||||||||    
T  24832155 atgcttttaatcattca 24832171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 13877030 - 13877076
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  13877030 atagagatagaggagttaccaatagttcatgtaccaataatcttgcc 13877076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 16549269 - 16549220
Alignment:
Q  4 ttgatagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||||||    
T  16549269 ttgatagagatagaggagttaccaatagttcttgtaccaatgatcttgcc 16549220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 16616393 - 16616442
Alignment:
Q  4 ttgatagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||||||    
T  16616393 ttgatagagatagaggagttaccaatagttcttgtaccaatgatcttgcc 16616442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 27289289 - 27289231
Alignment:
Q  71 ggaaaatatgcttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgac 129  Q
    |||| ||| ||||||||| ||||||||| || ||| ||||||||| |||||||||||||    
T  27289289 ggaacataggcttttctcctgtcatgtgacacgagcaaccactgtccaagtaccatgac 27289231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 13177424 - 13177379
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  13177424 ttcagacttaggtacccatatcttcatgggtcctttagggttagtt 13177379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 14143533 - 14143577
Alignment:
Q  10 gagatagaagaattaccaatagttcatgtaccaataatcttgcct 54  Q
    |||||||| || ||||||||||||| ||||||||| |||||||||    
T  14143533 gagatagaggagttaccaatagttcctgtaccaatgatcttgcct 14143577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 24804621 - 24804576
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  24804621 ttcagacttaggtacccatatcttcatgggttctttggggttagtt 24804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 28704420 - 28704374
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  28704420 atagagatagaggaattaccaatagttcttgtaccaatgatcttgcc 28704374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 26443874 - 26443926
Alignment:
Q  4 ttgatagagatagaagaattaccaatagttcatgtaccaataatcttgccttt 56  Q
    ||||| ||||||||||||||||||||||| ||  |||||||||| | ||||||    
T  26443874 ttgattgagatagaagaattaccaatagtccacataccaataatttagccttt 26443926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 27518902 - 27518805
Alignment:
Q  53 ctttcagtgttaatgtttggaaaatatgcttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgactgaagcgttggttctcccata 150  Q
    |||||| |||||  |||||||| |||||||||||| ||||||||| ||  ||| ||| |||||||| |||||||||||| | | ||| ||||||||||    
T  27518902 ctttcaatgttagggtttggaacatatgcttttctattgtcatgtatcgggagcaactactgttcaggtaccatgactggaactttgattctcccata 27518805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 19162673 - 19162628
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  19162673 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 19162628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 22652536 - 22652581
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  22652536 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 22652581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 17718765 - 17718810
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgc 52  Q
    ||||||||||| || ||||||||| ||||||||||||| |||||||    
T  17718765 atagagatagaggagttaccaataattcatgtaccaatgatcttgc 17718810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 46202 - 46248
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||    
T  46202 atagagatagaggagttaccaatagttcctgtaccaataatcttgcc 46248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 17012338 - 17012384
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||    
T  17012338 atagagatagaggagttaccaatagttcctgtaccaataatcttgcc 17012384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 17544863 - 17544817
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||    
T  17544863 atagagatagaggagttaccaatagttcctgtaccaataatcttgcc 17544817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 45563804 - 45563850
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||    
T  45563804 atagagatagaggagttaccaatagttcctgtaccaataatcttgcc 45563850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 23802576 - 23802629
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagttatgaagga 228  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||||| ||||    
T  23802576 ttcagacttaggtacccatatcttcatgggtccttttgggttagttatggagga 23802629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 3840826 - 3840871
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  3840826 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 3840871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 23790529 - 23790574
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  23790529 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 23790574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 15867249 - 15867203
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||    
T  15867249 atagagataaatgagttaccaatagttcatgtaccaataatcttgcc 15867203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 39042706 - 39042753
Alignment:
Q  83 tttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgact 130  Q
    |||||||||||||||||| |||| ||||||||| || |||||||||||    
T  39042706 tttctcttgtcatgtgtcgtgagcaaccactgtccaggtaccatgact 39042753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 39042594 - 39042640
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||||    
T  39042594 atagagatagaggagttactaatagttcatgtaccaatgatcttgcc 39042640  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 17244478 - 17244519
Alignment:
Q  10 gagatagaagaattaccaatagttcatgtaccaataatcttg 51  Q
    |||||||| || ||||||||||||||||||||||| ||||||    
T  17244478 gagatagaggagttaccaatagttcatgtaccaatgatcttg 17244519  T

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Target: scaffold0382 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 4275 - 4230
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  4275 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 4230  T

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Target: scaffold0382; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 12658 - 12613
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  12658 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 12613  T

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Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 2674 - 2629
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  2674 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 2629  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 17611544 - 17611499
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  17611544 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 17611499  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 12349486 - 12349535
Alignment:
Q  81 cttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgact 130  Q
    |||||||| ||||||||||| |||| ||||||||| || |||||||||||    
T  12349486 cttttctcctgtcatgtgtcgtgagcaaccactgtacaggtaccatgact 12349535  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 17780873 - 17780918
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  17780873 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 17780918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 22383858 - 22383903
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  22383858 ttcagacttaggtacccatattttcatgggtcctttgaggttagtt 22383903  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 5985 - 6028
Alignment:
Q  10 gagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  5985 gagatagaagagttaccaatagttcctgtaccaatgatcttgcc 6028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 7989 - 8035
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || ||||||||||||| ||||||||| ||||||||    
T  7989 atagagatagaggagttaccaatagttcctgtaccaatgatcttgcc 8035  T

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Target: scaffold0161 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 13285 - 13243
Alignment:
Q  10 gagatagaagaattaccaatagttcatgtaccaataatcttgc 52  Q
    |||||||| || ||||||||||||||||||||||| |||||||    
T  13285 gagatagaggagttaccaatagttcatgtaccaatgatcttgc 13243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 17958 - 17916
Alignment:
Q  10 gagatagaagaattaccaatagttcatgtaccaataatcttgc 52  Q
    |||||||| || ||||||||||||||||||||||| |||||||    
T  17958 gagatagaggagttaccaatagttcatgtaccaatgatcttgc 17916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 20896 - 20854
Alignment:
Q  10 gagatagaagaattaccaatagttcatgtaccaataatcttgc 52  Q
    |||||||| || ||||||||||||||||||||||| |||||||    
T  20896 gagatagaggagttaccaatagttcatgtaccaatgatcttgc 20854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 74999 - 75045
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaataatcttgcc 53  Q
    ||||||||||| || |||||| |||||| ||||||||||||||||||    
T  74999 atagagatagaggagttaccagtagttcctgtaccaataatcttgcc 75045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 2083 - 2120
Alignment:
Q  7 atagagatagaagaattaccaatagttcatgtaccaat 44  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  2083 atagagatagaagagttaccaatagttcatataccaat 2120  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 112857 - 112902
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  112857 ttcagacttaggtacccatatcttcatgggtacttttgggttagtt 112902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 13531066 - 13531111
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  13531066 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 13531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 23485971 - 23486016
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    ||||||||||||||| ||||| |||||| || ||||||||||||||    
T  23485971 ttcagacttaggtacccatatcttcatgtgtcctttggggttagtt 23486016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 25182244 - 25182199
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||||||    
T  25182244 ttcaaacttaggtacgcatatcttcatgggtcctttggggttagtt 25182199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 1390 - 1346
Alignment:
Q  176 tcagacttaggtacacatatattcatgggttctttggggttagtt 220  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||    
T  1390 tcagacttaggtacccatatcttcatgggtccttttgggttagtt 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 197574 - 197622
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagttatg 223  Q
    |||||| |||||||| ||||| ||||||||| |||| ||||||||||||    
T  197574 ttcagatttaggtacccatatcttcatgggtccttttgggttagttatg 197622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 135591 - 135639
Alignment:
Q  175 ttcagacttaggtacacatatattcatgggttctttggggttagttatg 223  Q
    |||||| |||||||| ||||| ||||||||| |||| ||||||||||||    
T  135591 ttcagatttaggtacccatatcttcatgggtcctttagggttagttatg 135639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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