View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0261-INSERTION-3 (Length: 498)
Name: NF0261-INSERTION-3
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 496
Target Start/End: Complemental strand, 3299972 - 3299484
Alignment:
| Q |
7 |
atgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299972 |
atgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatc |
3299873 |
T |
|
| Q |
107 |
ctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299872 |
ctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagagg |
3299773 |
T |
|
| Q |
207 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3299772 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataac |
3299673 |
T |
|
| Q |
307 |
taatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgacc |
406 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299672 |
taattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgacc |
3299573 |
T |
|
| Q |
407 |
gaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299572 |
-aagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttt |
3299484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 496
Target Start/End: Complemental strand, 3392865 - 3392377
Alignment:
| Q |
7 |
atgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392865 |
atgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatc |
3392766 |
T |
|
| Q |
107 |
ctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392765 |
ctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagagg |
3392666 |
T |
|
| Q |
207 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3392665 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataac |
3392566 |
T |
|
| Q |
307 |
taatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgacc |
406 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392565 |
taattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgacc |
3392466 |
T |
|
| Q |
407 |
gaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392465 |
-aagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttt |
3392377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 1163353 - 1163676
Alignment:
| Q |
7 |
atgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaa |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
1163353 |
atgaaaagcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaa |
1163452 |
T |
|
| Q |
104 |
atcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaag |
203 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||| | || | || |||||||||||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
1163453 |
atcctccaatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaag |
1163552 |
T |
|
| Q |
204 |
aggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcat |
303 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
1163553 |
aggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaa |
1163652 |
T |
|
| Q |
304 |
aactaatcttggtgatcaaaatgg |
327 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
1163653 |
aactaatcttggtaatcaaaatgg |
1163676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 82 - 327
Target Start/End: Complemental strand, 1850293 - 1850063
Alignment:
| Q |
82 |
aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg |
181 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| ||||||| |
|
|
| T |
1850293 |
aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg |
1850194 |
T |
|
| Q |
182 |
gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact |
281 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
1850193 |
gt---------------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataact |
1850109 |
T |
|
| Q |
282 |
ctaccattctcctcttgggcataactaatcttggtgatcaaaatgg |
327 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1850108 |
ctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg |
1850063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 40418738 - 40418404
Alignment:
| Q |
7 |
atgaaaagcatcttccttg--ttttg--gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagca |
102 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |||||||||| || | ||||||| |||||||||||| |||| | |||||||| ||||||| |
|
|
| T |
40418738 |
atgaaaagcatcttccttgatttttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagca |
40418639 |
T |
|
| Q |
103 |
aatcctccaatggataaaaaggtcttctaaagggggattt-gatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcga |
201 |
Q |
| |
|
| |||||||||||| ||||||||| || |||||||| || || ||| ||| | || |||||| ||| ||||||| ||||||| || || |
|
|
| T |
40418638 |
agtcctccaatggaacaaaaggtctggtag-gggggattacgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgttga |
40418540 |
T |
|
| Q |
202 |
agaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||| |
|
|
| T |
40418539 |
agaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccatt---ctcttcggc |
40418443 |
T |
|
| Q |
302 |
ataactaatcttggtgatcaaaatggcagcaggaaggtt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40418442 |
ataactaatcttggtgatcaaaatggcagcaggaaggtt |
40418404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 362 - 496
Target Start/End: Complemental strand, 1850049 - 1849916
Alignment:
| Q |
362 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcac |
461 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850049 |
caggtcataaccaagagcatggtcaccaggttttaaaatacgact-aagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcac |
1849951 |
T |
|
| Q |
462 |
acgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1849950 |
acgagcaactatggcattagctaaacgatattttt |
1849916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 46 - 340
Target Start/End: Complemental strand, 39880232 - 39879941
Alignment:
| Q |
46 |
aaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatt-tga |
144 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| |||||||||| || |||||||| ||| |
|
|
| T |
39880232 |
aaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtctggtag-gggggattctga |
39880134 |
T |
|
| Q |
145 |
tggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttg |
244 |
Q |
| |
|
|| ||| ||| | || |||||| ||| ||||||| ||||||| | ||||| ||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
39880133 |
agggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttg |
39880034 |
T |
|
| Q |
245 |
ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
340 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39880033 |
ataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39879941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 362 - 496
Target Start/End: Original strand, 1163690 - 1163820
Alignment:
| Q |
362 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcac |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
1163690 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgacc-aagatgagtcctgatttgaaaagt---gtgattattatttccaatatctttgac |
1163785 |
T |
|
| Q |
462 |
acgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1163786 |
acgagcaactatggcattagctaaacgatattttt |
1163820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 31 - 340
Target Start/End: Complemental strand, 38988132 - 38987826
Alignment:
| Q |
31 |
gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttct |
130 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||| |||||||||||| || | | |||||||| |||||||| ||||||||||||| ||||||||| | |
|
|
| T |
38988132 |
gttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactagatcatccgtcaagcaagtcctccaatggatcaaaaggtctggt |
38988033 |
T |
|
| Q |
131 |
aaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatct |
230 |
Q |
| |
|
| |||| | || || |||| ||| | | |||| || ||||||||||| |||| || | |||||| |||| || ||||||||||||||| |
|
|
| T |
38988032 |
aggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgttgtagatca |
38987933 |
T |
|
| Q |
231 |
tttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcag |
330 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
38987932 |
ttgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcggcataactaatcttgctgatcaaaatggcag |
38987836 |
T |
|
| Q |
331 |
caggaaggtt |
340 |
Q |
| |
|
|||||||||| |
|
|
| T |
38987835 |
caggaaggtt |
38987826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 39879898 - 39879765
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
39879898 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgacc-aagatgagtcctgatttgaaaagttgtg---tcattatttccagtatcttt |
39879803 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39879802 |
cacacgagcaaccacagcatcagctaaacgatattttt |
39879765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 40418367 - 40418234
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
40418367 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgacc-aagatgagtcctgatttgaaaagttgtg---tcattatttccaatatcttt |
40418272 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
40418271 |
cacacgagcaaccacagcatcagctaaacaatattttt |
40418234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 38987789 - 38987656
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
38987789 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccg-agatgagtcctgatttgaaaagttgtg---tcattatttccagtatcttt |
38987694 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38987693 |
cacacgagcaaccacagcatcagctaaacgatattttt |
38987656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 39726502 - 39726369
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
39726502 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccg-agatgagtcctgatttgaaaagttgtg---tcattatttccagtatcttt |
39726407 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39726406 |
cacacgagcaaccacagcatcagctaaacgatattttt |
39726369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 39726682 - 39726545
Alignment:
| Q |
200 |
gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgg |
299 |
Q |
| |
|
|||||| |||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| | |
|
|
| T |
39726682 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcg |
39726586 |
T |
|
| Q |
300 |
gcataactaatcttggtgatcaaaatggcagcaggaaggtt |
340 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39726585 |
gcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39726545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 39168930 - 39168797
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||| | ||||||| ||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
39168930 |
agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccta-gatgagttttgatttgaaaagttgtgtcattatt---tccaaaatcttc |
39168835 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
39168834 |
cacacgagcaaccacggcatcagctaaccgatattttt |
39168797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 39399943 - 39399810
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||||| |||||||||||||||||| |||||| ||||| || || |
|
|
| T |
39399943 |
agacaagtcataaccaagagcatagtcaccggattttaaaatatgacc-aagatgagtcctgatttgaaaagttgtgtcattatt---tccaaaattttc |
39399848 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39399847 |
cacacgagcaaccacggcatcagctaaacggtattttt |
39399810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 39169101 - 39168974
Alignment:
| Q |
212 |
agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaac---tctaccattctcctcttgggcataacta |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| || || | |||||||| |
|
|
| T |
39169101 |
agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcat---cataacta |
39169005 |
T |
|
| Q |
309 |
atcttggtgatcaaaatggcagcaggaaggt |
339 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
|
|
| T |
39169004 |
ctcttggtaatcaaaattgcagcaggaaggt |
39168974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
| Q |
224 |
tagatcttttaagaagagttgataatcagattcccacttatcc |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
39400084 |
tagatcttctaagaagagttgataatcagattgccacttatcc |
39400042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 39726854 - 39726755
Alignment:
| Q |
32 |
ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtgg----atcatccatcaagcaaatcctccaatggataaaaaggtct |
127 |
Q |
| |
|
||||||||| ||||||||||||| | | ||||| |||||||||||| |||| | | ||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
39726854 |
ttattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
39726755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 25912122 - 25912252
Alignment:
| Q |
207 |
agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataac |
306 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
25912122 |
agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac |
25912218 |
T |
|
| Q |
307 |
taatcttggtgatcaaaatggcagcaggaaggtt |
340 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
25912219 |
taatcttggtgatcaaaatggcagcatgaaggtt |
25912252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 359 - 496
Target Start/End: Original strand, 25912292 - 25912425
Alignment:
| Q |
359 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatcttt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25912292 |
agacaggtcataaccaagagcatggtcatcgggttttagaatacgacc-aagatgagtcctgatttgaaaagttgtgtcatta---tttccaatatcttt |
25912387 |
T |
|
| Q |
459 |
cacacgagcaaccatggcatcagctaaacgatattttt |
496 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25912388 |
cacacgagcaaccacatcatcagctaaacgatattttt |
25912425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
| Q |
365 |
gtcataaccaagagcatggtcaccgggttttaaaatacgaccgaagatgagtcttgatttgaaaagtt |
432 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44444772 |
gtcataaccaagagcatagtcaccaggttttaaaatacgacc-aagatgagtcttgatttgaaaagtt |
44444838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 44444435 - 44444543
Alignment:
| Q |
23 |
ttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa |
122 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| | ||||||| ||||||||||||||||| | |||||||| |||||||| ||||| |||||| |||| |
|
|
| T |
44444435 |
ttgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaactagatcatccgtcaagcaagtcctctaatggaacaaaa |
44444534 |
T |
|
| Q |
123 |
ggtcttcta |
131 |
Q |
| |
|
| ||||||| |
|
|
| T |
44444535 |
gatcttcta |
44444543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 25911951 - 25912046
Alignment:
| Q |
32 |
ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct |
127 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
25911951 |
ttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtct |
25912046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 44444614 - 44444674
Alignment:
| Q |
217 |
cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaac |
277 |
Q |
| |
|
|||||| ||||| ||||||||| |||| ||||||||||||| | |||||||||||| |||| |
|
|
| T |
44444614 |
cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac |
44444674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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