View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0261-INSERTION-4 (Length: 693)

Name: NF0261-INSERTION-4
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0261-INSERTION-4
NF0261-INSERTION-4
[»] chr4 (1 HSPs)
chr4 (8-693)||(27966457-27967140)


Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Complemental strand, 27967140 - 27966457
Alignment:
Q  8 tgcacgatgttaaattgcagactgtagagtggtctccaccctcaaatttaaggacca-catgatccaatagtgagaccaattcaaagaaacagatagtga 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  27967140 tgcacgatgttaaattgcagactgtagagtggcctccaccctcaaatttaaggaccaacatgatccaataatgagaccaattcaaagaaacagatagtga 27967041  T
Q  107 gggaaagcgaaataaatcactgaaagccacatcaagatcaactttagcaaaccaccacatgttgttacgtggctcgtttatcatcattaaattcatattt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27967040 gggaaagcgaaataaatcactgaaagccacatcaagatcaactttagcaaaccaccacatgttgttacgtggctcgtttatcatcattaaattcatattg 27966941  T
Q  207 ctgcatctttttatcaaacatgctacggaatacaagtcacttaccaaactaaacaacactaactaaagaattcgacataaaaacttacaacttacggttt 306  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27966940 ctgcatctttttatcaaacatgctactgaatacaagtcacttaccaaactaaacaacactgactaaagaattcgacataaaaacttacaacttacggttt 27966841  T
Q  307 cagatnnnnnnnnnnnnnnngactacacaaaattgaatatgctattgaaaagaatttttaccaatccttgcaatttactaacttcttacaaaataactga 406  Q
    |||||               |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||  |||||||||||||||||    
T  27966840 cagatataaaaaaataaaaagactacacaaaattgaatatgctattgaaaagaattt--actaatccttgcaatttactaatatcttacaaaataactga 27966743  T
Q  407 ggccagtagaatgcttacatttcataatcgaatcaaaaacaaacaaaccggttttatttttaaaaattgaatgaactatatgattgctaaagtgggatac 506  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27966742 ggcctgtagaatgcttacatttcataatcgaatcaaaaacaaacaaaccggttttatttttaaaaattgaatgaactatatgattgctaaagtgggatac 27966643  T
Q  507 aattgggatatcactgaacaaaaatgtcatcaatcccagaattgttctaaacaatatagtgaacacacccattcagggatcattggctacttgatgtcac 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27966642 aattgggatatcactgaacaaaaatgtcatcaatcccagaattgttctaaacaatatagtgaacacacccattca-ggatcattggctacttgatgtcac 27966544  T
Q  607 cgaggatttcttcgatctcttactcatgtaaatcttgttgtagacggtctttgttctatatgacagtagaatatctaagaaaaaccc 693  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27966543 cgaggatttcttcgatctcttactcatgtaaatcttgttgtagacggtctttgttctatatgacagtagaatatctaagaaaaaccc 27966457  T

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