View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261-INSERTION-5 (Length: 711)
Name: NF0261-INSERTION-5
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-5 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 317 - 558
Target Start/End: Original strand, 34179389 - 34179630
Alignment:
| Q |
317 |
tcatgatttaagtgtgttttcaagttatgtaattatgtttcttccctttaatcagacaattgtataggtgtttttaagtcttccatcgacaaatcatgta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34179389 |
tcatgatttaagtgtgttttcaagttatgtaattatgtttcttccctttaatcagacaattgtataggtgtttttaagtcttccatcgacaaatcatgta |
34179488 |
T |
|
| Q |
417 |
aattggcaagcaaaacaccttatggaaattttagatgacatggaatgaaggttttcaaggttctttaaggctttgaagacattacaagttgaagaaatta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34179489 |
aattggcaagcaaaacaccttatggaaattttagatgacatggaatgaaggttttcaaggttctttaaggctttgaagacattacaagttgaagaagtta |
34179588 |
T |
|
| Q |
517 |
tgttacaagaacacgtcggaaaaggaaaacaccttatataaa |
558 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34179589 |
tgttacaagaacacgtcggaaaaggaaaacaccttatataaa |
34179630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 60 - 322
Target Start/End: Original strand, 34178921 - 34179184
Alignment:
| Q |
60 |
aaaataaaataaaagaacatgaccccatgtttttcggccagcaacttattcaattggttagattacattttgcgactccttctccataaaatccttcagg |
159 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34178921 |
aaaaaaaaaaaaaagaacatgaccccatgtttttcggccagcaacttattcaattggttagattacattttgcgactccttctccataaaatccttcagg |
34179020 |
T |
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| Q |
160 |
atatataacattgttgt-nnnnnnnnnnnnnnnnntacacacactttgatccgaaatgttttaagcttttagttgaaaatggtctgtaacagaattaatt |
258 |
Q |
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| T |
34179021 |
atatataacattgttgtaaaaaaataaaataaaaatacacacactttgatccgaaatgttttaagcttttagttgaaaatggtctataacagaattaatt |
34179120 |
T |
|
| Q |
259 |
aagggttgagccggnnnnnnntctaatctttatttactatcacttctttctaaagatatcatga |
322 |
Q |
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| T |
34179121 |
aagggttgagccggaaaaaaatctaatttttattttctatcacttctttctaaagatatcatga |
34179184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 556 - 711
Target Start/End: Original strand, 34179711 - 34179866
Alignment:
| Q |
556 |
aaagttgtactcgatgatggatacgggttagagatctaagcctttttaacatgactttggttggaaaaaggaggtggaaggctatctgaagaggccatac |
655 |
Q |
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| T |
34179711 |
aaagttgtactcgacgatggatacgggttagagatctaagcctttttcacatgactttggttggaaaaaggaggtagaaggctatctgaagaggccatac |
34179810 |
T |
|
| Q |
656 |
tctatggagacagctgtctattgctagatatcatagtcagttctcttctttttctc |
711 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
34179811 |
tctatggagacagctgtttattgctagatatcatagttagttctcttctttttctc |
34179866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 366 - 548
Target Start/End: Original strand, 34150721 - 34150901
Alignment:
| Q |
366 |
aatcagacaattgtataggtgtttttaagtcttccatcgacaaatcatgtaaattggcaagcaaaacaccttatggaaattttagatgacatggaatgaa |
465 |
Q |
| |
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|||||||||||| |||||| ||||| ||||| || | |||||||||||| | |||||||| ||||| ||| |||||||||| ||||||||||||| |
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| T |
34150721 |
aatcagacaatttcataggt--ttttaggtcttttattgtcaaatcatgtaattcagcaagcaaggcacctcatgaaaattttagaagacatggaatgaa |
34150818 |
T |
|
| Q |
466 |
ggttttcaaggttctttaaggctttgaagacattacaagttgaagaaattatgttacaagaacacgtcggaaaaggaaaacac |
548 |
Q |
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| T |
34150819 |
aattttcaaggttctataaagctttgaatacattacaagttggaaaaattatgttccaagaacaagttggagaaggaaaacac |
34150901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 34178675 - 34178730
Alignment:
| Q |
8 |
gttgacaagttaatgaccattggattaatatttatttaacttcatcatatataaaa |
63 |
Q |
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| T |
34178675 |
gttgacaagttaatgaccattggattaatatttatttaacttcatcatataaaaaa |
34178730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 519
Target Start/End: Complemental strand, 39526978 - 39526866
Alignment:
| Q |
407 |
aaatcatgtaaattggcaagcaaaacaccttatggaaattttagatgacatggaatgaaggttttcaaggttctttaaggctttgaagacattacaagtt |
506 |
Q |
| |
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||||||||||| || | || ||| |||||| |||| | |||| || || | |||| |||| || |||||||| | ||||||||||||||||| |||||| |
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| T |
39526978 |
aaatcatgtaatttagaaaacaagacacctcatggtagttttggaagataaggaacgaagattatcaaggttttagaaggctttgaagacattgcaagtt |
39526879 |
T |
|
| Q |
507 |
gaagaaattatgt |
519 |
Q |
| |
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| ||||||||||| |
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| T |
39526878 |
ggagaaattatgt |
39526866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 512
Target Start/End: Complemental strand, 29529426 - 29529367
Alignment:
| Q |
453 |
gacatggaatgaaggttttcaaggttctttaaggctttgaagacattacaagttgaagaa |
512 |
Q |
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|||||| ||||||| || ||||||||| |||||||||||||||||||||| ||| |||| |
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| T |
29529426 |
gacatgaaatgaagattatcaaggttcaataaggctttgaagacattacaaattggagaa |
29529367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 550
Target Start/End: Original strand, 15929901 - 15930020
Alignment:
| Q |
431 |
acaccttatggaaattttagatgacatggaatgaaggttttcaaggttctttaaggctttgaagacattacaagttgaagaaattatgttacaagaacac |
530 |
Q |
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|
|||||| |||||| |||| || ||||||||||||| || | | |||||| |||||||||||| |||||||||||| |||||| ||| |||||||| |
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| T |
15929901 |
acacctcatggaagttttggaagacatggaatgaaaattattatggttctataaggctttgaatacattacaagttagggaaattttgtcccaagaacaa |
15930000 |
T |
|
| Q |
531 |
gtcggaaaaggaaaacacct |
550 |
Q |
| |
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|||||| |||||||| |||| |
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| T |
15930001 |
gtcggagaaggaaaatacct |
15930020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 453 - 515
Target Start/End: Complemental strand, 24248440 - 24248378
Alignment:
| Q |
453 |
gacatggaatgaaggttttcaaggttctttaaggctttgaagacattacaagttgaagaaatt |
515 |
Q |
| |
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||||| |||||||| || |||||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
24248440 |
gacatagaatgaagattatcaaggttctataagggtttgaagacattacaagttggagaaatt |
24248378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 459950 - 460024
Alignment:
| Q |
405 |
acaaatcatgtaaattggcaagcaaaacaccttatggaaattttagatgacatggaatgaaggttttcaaggttc |
479 |
Q |
| |
|
||||||||||||||| | ||||||||| |||| | ||| ||||||| |||||||||||||| || |||| |||| |
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| T |
459950 |
acaaatcatgtaaatcgacaagcaaaatacctcacagaagttttagaagacatggaatgaagattatcaatgttc |
460024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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