View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261-INSERTION-6 (Length: 535)
Name: NF0261-INSERTION-6
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-6 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 526
Target Start/End: Complemental strand, 5185429 - 5184910
Alignment:
| Q |
7 |
aattcttgtttttgatagcctcatgaagcatatcagcttcacattgtgccaaacttgcattgacctcactcccaccatacctaaatgaactcaccaaccc |
106 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5185429 |
aattcttgtttttaatagcctcatgaagcatatcagcttcacattgtgccaaacttgcattgacctcactcccatcatacctaaatgaactcaccaaccc |
5185330 |
T |
|
| Q |
107 |
caccaaaagctgctcaaaaataaatcacaacaccttttattaacacaaatgtcttttatgaataaaatcggttttataagagagatttggatcaacaaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||| |||| |
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| T |
5185329 |
caccaaaagctgctcaaaaataaatcacaacaccttttattaacacaaatgtctattatgaataaaatcagttttataagagacatttgaatcaataaag |
5185230 |
T |
|
| Q |
207 |
ttgatatatctagaccaaattttaaactaaatgcatcggtctttgttgagcagaacgtcttttataaataagactgaagggagtatattatgacttgcct |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5185229 |
ttgatatatttagaccaaattttaaactaaatgcatcggtctttgttgaggaaaacgtcttttataaataagattgaagggagtatattatgacttgcct |
5185130 |
T |
|
| Q |
307 |
gacgaagatggccattggtattggtagccacgtcttcctccaatgaacgtttatatcggttgtgataagcacgtctcaaaatgaacagttcatgaggtga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| |
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| T |
5185129 |
gacgaagatggccattggtattggtagccacgtcttcctccaaggaacgtttatatcgattgtgataagcacgtctcaaattgaaaagttcatcaggtga |
5185030 |
T |
|
| Q |
407 |
agagacacatgaaatttccacaatcaaatggtagtttatgtgagcatttcttagtgctatatttgccaacaaagcttcacgttctgcaggttccaatatc |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5185029 |
agagacacatgaaatttccacaatcaaatggtagtttatgttagcatttcttagtgctatatttgccaacaaagcttcacgttctgctggttccaatatc |
5184930 |
T |
|
| Q |
507 |
catctatacattgctctctg |
526 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
5184929 |
catctatacattgctctctg |
5184910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 5237823 - 5237421
Alignment:
| Q |
8 |
attcttgtttttgatagcctcatgaagcatatcagcttcacattgtgccaaacttgcattgacctcactcccaccatacctaaatgaactcaccaacccc |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5237823 |
attcttgtgtttgatagcctcatgaagcatatcagcttcacattgtgccaaacttgcattgacttcactcccaccatacctaaatgaactcaccaacccc |
5237724 |
T |
|
| Q |
108 |
accaaaagctgctcaaaaataaatcacaacaccttttattaacacaaatgtcttttatgaataaaatcggttttataagagagatttggatcaacaaagt |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | | |||||| |||||||| |
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| T |
5237723 |
accaaaagctgctcaaaaattaatcacaacaccttttattaacacaaatgtctcttatggataaaatcggttttatacaaaatatttgggtcaacaaaag |
5237624 |
T |
|
| Q |
208 |
tgatatatctagaccaaattttaaactaaatgcatcggtctttgttgagcagaacgtcttttataaataaga-ctgaagg-gagtatattatgacttgcc |
305 |
Q |
| |
|
| |||||||||||||||||||| || || || |||| | |||||||| | |||||||||||||||||||| | ||||| | |||||||||||||||| |
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|
| T |
5237623 |
ttatatatctagaccaaattttgaattagatacatcaatttttgttgaaaaaaacgtcttttataaataagatcagaaggagtatatattatgacttgcc |
5237524 |
T |
|
| Q |
306 |
tgacgaagatggccattggtattggtagccacgtcttcctccaatgaacgtttatatcggttgtgataagcacgtctcaaaatgaacagttcatgaggtg |
405 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
5237523 |
tgacgaagataaccattgttattggtagcaacgtcttcctccaaggaacgtttatatcgattgtgataagcacgtctcaaattgaaaagttcatcaggtg |
5237424 |
T |
|
| Q |
406 |
aag |
408 |
Q |
| |
|
||| |
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|
| T |
5237423 |
aag |
5237421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 439 - 525
Target Start/End: Complemental strand, 5237422 - 5237336
Alignment:
| Q |
439 |
agtttatgtgagcatttcttagtgctatatttgccaacaaagcttcacgttctgcaggttccaatatccatctatacattgctctct |
525 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5237422 |
agtttatgtttgcatttcttagtgctatatttgccaacgaagcttcacgttctgctggttccaatatccatctatacattgctctct |
5237336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 5180847 - 5180772
Alignment:
| Q |
50 |
ttgtgccaaacttgcattgacctca-ctcccaccatacctaaatgaactcaccaaccccaccaaaagctgctcaaaa |
125 |
Q |
| |
|
||||||||| ||||||||| |||| ||||| | |||||||||||| |||||||| || |||||||||||||||||| |
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|
| T |
5180847 |
ttgtgccaattttgcattgatctcatctccctc-atacctaaatgagctcaccaatccaaccaaaagctgctcaaaa |
5180772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 14152496 - 14152606
Alignment:
| Q |
9 |
ttcttgtttttgatagcctcatgaagcatatcagcttcacattgtgccaaacttgcattgacctcactcccaccatacctaaatgaactcaccaacccca |
108 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||| |||| |||||||| |||||||| || | |
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|
| T |
14152496 |
ttcttgtttttgacagcctcatgaagaatatcagcttcatgttttgccaaaattggattgatttcaacaccatcatatctaaatgagctcaccaatccaa |
14152595 |
T |
|
| Q |
109 |
ccaaaagctgc |
119 |
Q |
| |
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||||||||||| |
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|
| T |
14152596 |
ccaaaagctgc |
14152606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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