View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0261-INSERTION-7 (Length: 697)

Name: NF0261-INSERTION-7
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0261-INSERTION-7
NF0261-INSERTION-7
[»] chr2 (9 HSPs)
chr2 (34-362)||(32710656-32710980)
chr2 (525-697)||(32710237-32710409)
chr2 (376-529)||(32710436-32710589)
chr2 (557-669)||(2419905-2420017)
chr2 (614-670)||(33459224-33459280)
chr2 (614-669)||(8951334-8951389)
chr2 (620-667)||(41513846-41513893)
chr2 (6-35)||(32711017-32711046)
chr2 (605-668)||(42510754-42510818)
[»] chr8 (4 HSPs)
chr8 (223-384)||(13054782-13054945)
chr8 (525-669)||(13054365-13054506)
chr8 (376-517)||(13054540-13054673)
chr8 (664-697)||(13054297-13054330)
[»] chr3 (1 HSPs)
chr3 (74-186)||(34626922-34627031)
[»] chr7 (1 HSPs)
chr7 (285-325)||(28362786-28362826)
[»] chr1 (2 HSPs)
chr1 (74-141)||(51044095-51044163)
chr1 (569-667)||(33302081-33302179)
[»] chr6 (1 HSPs)
chr6 (342-384)||(14207538-14207580)
[»] scaffold0187 (2 HSPs)
scaffold0187 (634-664)||(7509-7539)
scaffold0187 (634-664)||(17837-17867)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 34 - 362
Target Start/End: Complemental strand, 32710980 - 32710656
Alignment:
Q  34 caaggaagaagtgaacagactgcgaaaaatagttgcataggcttctcatcttcttcagggaccataaaccttttcttagtttagggtttaaagaacataa 133  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32710980 caaggaagaagtgaacaaattgcaaaaaatagttgcataggcttctcatcttcttcagggaccaaaaaccttttcttagtttagggtttaaagaacataa 32710881  T
Q  134 atggcgacctatgcatgtttgtgaggacactgggaaaaagaacacaaaggacatttttgcagaaatccagatgaaccacctctattcgttcctttctttg 233  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710880 atggcgacccatgcatgtttgtgaggacaataggaaaaagaacacaaaggacatttttgcagaaatccagatgaaccacctctattcgttcctttctttg 32710781  T
Q  234 gtttccaaccgcagaatcgaaattctaaccttcgacagtagtgctggtctcattgttatcaactataaaatttatcctcctactggttacctgcaattag 333  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710780 gttcccaaccgccgaatcgaaattctaaccttcgacagtagtgctggtctcattgttatcaactataaaatttatcctcctactggttacctgcaattag 32710681  T
Q  334 acaatatatagtgattcactgcaatgcaa 362  Q
    |||    ||||||||||||||||||||||    
T  32710680 aca----atagtgattcactgcaatgcaa 32710656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 525 - 697
Target Start/End: Complemental strand, 32710409 - 32710237
Alignment:
Q  525 ttttatagacttaaatatacatagacttcaacagtcttttgctacatcaaaataagtatagaacctttcaaattgtgagacaaaatttaaaaaatgacta 624  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710409 ttttatagacttaaatatacatagacttcaacagtcttttgctgcatcaaaataagtatagaacctttcaaattgtgagacaaaatttaaaaaatgacta 32710310  T
Q  625 aaatggttgatatttttcaatttaaaggactaaattgctatttcaacgaataaaatgcctatttactcatttg 697  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710309 aaatgtttgatatttttcaatttaaaggactaaattgctatttcaacgaataaaatgcctatttactcatttg 32710237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 376 - 529
Target Start/End: Complemental strand, 32710589 - 32710436
Alignment:
Q  376 gcaaccaaaaactacaaaaatcatgagtaggagaagaaagagtaaccataactcttgactcttgtatcattgtctggagaatttaccaaacaaaaaatta 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32710589 gcaaccaaaaactacaaaaatcatgagtaggagaagaaagagtaaccataactcttgactcttgtatcattgtccggagaatttaccaaacaaaaaatta 32710490  T
Q  476 atttgattgttttacccatgtctgttgaaagtttacttatgatatgacatttta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710489 atttgattgttttacccatgtctgttgaaagtttacttatgatatgacatttta 32710436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 669
Target Start/End: Original strand, 2419905 - 2420017
Alignment:
Q  557 agtcttttgctacatcaaaataagtatagaacctttcaaattgtgagacaaaattt-aaaaaatgactaaaatggttgatatttttcaatttaaaggact 655  Q
    ||||||||| | |||||||| |||| || ||||||| ||||||||   |||||||| |||||| ||||||| || ||||||||||| |||||||  ||||    
T  2419905 agtcttttgttgcatcaaaacaagtgtaaaaccttt-aaattgtggtgcaaaatttgaaaaaaagactaaattgattgatatttttaaatttaagagact 2420003  T
Q  656 aaattgctatttca 669  Q
    ||||||||||||||    
T  2420004 aaattgctatttca 2420017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 670
Target Start/End: Complemental strand, 33459280 - 33459224
Alignment:
Q  614 aaaaatgactaaaatggttgatatttttcaatttaaaggactaaattgctatttcaa 670  Q
    ||||| ||||||| |  ||||||||||||||||||| ||||| ||||||||||||||    
T  33459280 aaaaaggactaaattaattgatatttttcaatttaagggactgaattgctatttcaa 33459224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 669
Target Start/End: Original strand, 8951334 - 8951389
Alignment:
Q  614 aaaaatgactaaaatggttgatatttttcaatttaaaggactaaattgctatttca 669  Q
    |||||||| |||| || |||||||| |||||||||| ||||||| |||||||||||    
T  8951334 aaaaatgattaaattgattgatattattcaatttaagggactaatttgctatttca 8951389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 667
Target Start/End: Complemental strand, 41513893 - 41513846
Alignment:
Q  620 gactaaaatggttgatatttttcaatttaaaggactaaattgctattt 667  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||||    
T  41513893 gactaaattgattgatatttttcaatttaagggactaacttgctattt 41513846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 32711046 - 32711017
Alignment:
Q  6 cattaactagttacaaactcgtgctttgca 35  Q
    ||||||||||||||||||||||||||||||    
T  32711046 cattaactagttacaaactcgtgctttgca 32711017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 668
Target Start/End: Complemental strand, 42510818 - 42510754
Alignment:
Q  605 caaaatttaaaaaat-gactaaaatggttgatatttttcaatttaaaggactaaattgctatttc 668  Q
    |||||||| |||||| ||||||| || |||| |||||||||||||| |||||||| | |||||||    
T  42510818 caaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttc 42510754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 13054945 - 13054782
Alignment:
Q  223 tcctttctttggtttccaaccgcagaatcgaaattctaaccttcgacagtagtgctggtctcattgttatcaactataaaatttatcctcctactggtta 322  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13054945 tcctttctttggttcccaaccgcagaatcgaaattcaaaccttccacagtagtgctggtctcattgttatcaactataaaatttatcctcctactggtta 13054846  T
Q  323 cctgcaattagacaata--tatagtgattcactgcaatgcaattgcaatgcttacgcaaccaaa 384  Q
    ||| |||||||||||||   |||||||||||||| ||||||||||||||||||| |||| ||||    
T  13054845 cctacaattagacaatagtgatagtgattcactgtaatgcaattgcaatgcttaagcaagcaaa 13054782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 525 - 669
Target Start/End: Complemental strand, 13054506 - 13054365
Alignment:
Q  525 ttttatagacttaaatatacatagacttcaacagtcttttgctacatcaaaataagtatagaacctttcaaattgtgagacaaaatttaaaaaatgacta 624  Q
    |||||||| ||||||||||||||||||| || |||||| |||| |||||||||||| ||||||||||| |||||||| || |||||||||||||||||||    
T  13054506 ttttataggcttaaatatacatagacttgaatagtcttatgctgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaaaaaatgacta 13054407  T
Q  625 aaatggttgatatttttcaatttaaaggactaaattgctatttca 669  Q
    ||||| |||||||||||||||||||   |||||||||||||||||    
T  13054406 aaatgtttgatatttttcaatttaa---actaaattgctatttca 13054365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 376 - 517
Target Start/End: Complemental strand, 13054673 - 13054540
Alignment:
Q  376 gcaaccaaaaactacaaaaatcatgagtaggagaagaaagagtaaccataactcttgactcttgtatcattgtctggagaatttaccaaacaaaaaatta 475  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||       ||||||||||| |||||||||| |||||||||||||    
T  13054673 gcaaccaaaaactacacaaatcatgagtagaagaagaaagagtaaccagaactcttg-------tatcattgtctagagaatttac-aaacaaaaaatta 13054582  T
Q  476 atttgattgttttacccatgtctgttgaaagtttacttatga 517  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  13054581 atttgattgttttacccatgtctgttggaagtttactgatga 13054540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 697
Target Start/End: Complemental strand, 13054330 - 13054297
Alignment:
Q  664 atttcaacgaataaaatgcctatttactcatttg 697  Q
    ||||||||||||||||||||||||||||||||||    
T  13054330 atttcaacgaataaaatgcctatttactcatttg 13054297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 34626922 - 34627031
Alignment:
Q  74 gcttctcatcttcttcaggg-accataaaccttttcttagtttagggtttaaagaacataaatggcgacctatgcatgtttgtgaggacactgggaaaaa 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||| |||||||||||    |||||||||||||||| | | |||||    
T  34626922 gcttctcatcttcttcaggggaccataaaccttttcttagtttttgctttaaagaacaaaaatggcgacc----catgtttgtgaggacaatagaaaaaa 34627017  T
Q  173 gaacacaaaggaca 186  Q
    | ||||||||||||    
T  34627018 ggacacaaaggaca 34627031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 28362786 - 28362826
Alignment:
Q  285 attgttatcaactataaaatttatcctcctactggttacct 325  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  28362786 attgttatcaactataaaatttatcctcctactggtgacct 28362826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 51044163 - 51044095
Alignment:
Q  74 gcttctcatcttcttcaggg-accataaaccttttcttagtttagggtttaaagaacataaatggcgac 141  Q
    |||| ||||||||||||||| ||||||||||||||||||||||  | |||||||||||| |||| ||||    
T  51044163 gcttatcatcttcttcaggggaccataaaccttttcttagtttttgctttaaagaacatgaatgacgac 51044095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 667
Target Start/End: Complemental strand, 33302179 - 33302081
Alignment:
Q  569 catcaaaataagtatagaacctttcaaattgtgagacaaaatt-taaaaaatgactaaaatggttgatatttttcaatttaaaggactaaattgctattt 667  Q
    |||||||| ||| |||||| |||| ||||| ||| |||||||| || ||||||||||||  ||||||||||||| || || |||||||||| || |||||    
T  33302179 catcaaaacaagcatagaatctttaaaattctgatacaaaattatagaaaatgactaaatcggttgatattttt-aaattcaaggactaaaatgttattt 33302081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 14207538 - 14207580
Alignment:
Q  342 tagtgattcactgcaatgcaattgcaatgcttacgcaaccaaa 384  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  14207538 tagtgattcactgcaatgcaattgcaatgcttaagcaagcaaa 14207580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 664
Target Start/End: Complemental strand, 7539 - 7509
Alignment:
Q  634 atatttttcaatttaaaggactaaattgcta 664  Q
    |||||||||||||||||||||||||||||||    
T  7539 atatttttcaatttaaaggactaaattgcta 7509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 664
Target Start/End: Complemental strand, 17867 - 17837
Alignment:
Q  634 atatttttcaatttaaaggactaaattgcta 664  Q
    |||||||||||||||||||||||||||||||    
T  17867 atatttttcaatttaaaggactaaattgcta 17837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 177 times since January 2019
Visitors: 2562