View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261-INSERTION-8 (Length: 679)
Name: NF0261-INSERTION-8
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261-INSERTION-8 |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Original strand, 50383434 - 50384103
Alignment:
| Q |
8 |
tgataccctatcaaatctttattttgatacgttgtaaattaaaattgatcatttctaaaatttggtaacatcccaaatataaattaaatcttaaaaatga |
107 |
Q |
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| T |
50383434 |
tgataccctatcaaatctttattt-gatacgttgtaaattaaaattgatcatttctaaaatttggtaacatcccaaatataaattaaatcttaaaa-tga |
50383531 |
T |
|
| Q |
108 |
aattgtcattgattttcccttgaagaattatataccgattcagaattccgtttctcttacaggattcataggccagagcctcagaagttaaaaatataat |
207 |
Q |
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| T |
50383532 |
aattgtcattgattttcccttgaagaattatataccgattcagaattccgtttctcttacaggattcataggccagagcctcataagttaaaaatataat |
50383631 |
T |
|
| Q |
208 |
ttgaaataaaatagtctctttgaagattttcttgtttgcttgagaatgttacctagacgtagtgttttaaattcggattcccttgcttgctttgtaagtt |
307 |
Q |
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| T |
50383632 |
ttgaaataaaatagtttcgttgaagattttcttgtttgcttgagaatgttacctagacgtggtgttttaaattcggattctcttgcttgcgttgtaagtt |
50383731 |
T |
|
| Q |
308 |
gtggttaaacgaaaacttttctggagttgttgaacaaaagcttaaaacatctattcttttaatgttcnnnnnnnnagatgtatttgaaagttaatcttga |
407 |
Q |
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| T |
50383732 |
gtggttaaacgaaaacttttctggagttgttgaacaaaagcttaaaacatctattcttttaatgttcttttttttagatgtatttgaaagttaatcttga |
50383831 |
T |
|
| Q |
408 |
attcatcaaagacatcaattggaaggcttcatgtagttttggctagcatgcattttgtaaatttggaaggaacataagactattttgtcgaaaagattca |
507 |
Q |
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| T |
50383832 |
attcatcaaagacatcaataggaaggcttcatgtagttttggctagcatgcattttgtaaatttggaaggaacataagactattttgtcgaaaagattca |
50383931 |
T |
|
| Q |
508 |
tcggttgttgatattggtgatagggtgaaactccatcgtggtgttggcataaagcaaaattt-tagacatttgttctgatctaaatcattgttggtcgaa |
606 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
50383932 |
tcggttgttgatattgttgatagggtgaaactccatcgtggtgttggcataaagcaaaatttcaaaacatttgttctgatctaaatcattgttggtcgaa |
50384031 |
T |
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| Q |
607 |
cccaattgtttgctttaaggtgaaatacttattttatcgttcgatgtaattgtcg-tttatggttttgtttt |
677 |
Q |
| |
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| T |
50384032 |
cccaattgtgtgctttaaagtgaaataattattttatctttcgatgtaattgtcgttttatggttttgtttt |
50384103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 50388700 - 50388803
Alignment:
| Q |
113 |
tcattgattttcccttgaagaattatataccgattcagaattccgtttctcttacaggattcataggccagagcctcagaagttaaaaatataatttgaa |
212 |
Q |
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| T |
50388700 |
tcattcattttcacttgaagtataatataaccatctagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaaagatataatttgga |
50388799 |
T |
|
| Q |
213 |
ataa |
216 |
Q |
| |
|
|||| |
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|
| T |
50388800 |
ataa |
50388803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 664
Target Start/End: Original strand, 50389028 - 50389282
Alignment:
| Q |
410 |
tcatcaaagacatcaattggaaggcttcatgtagttttggctagcatgcattttgtaaatttggaaggaacataagacta--ttttgtcgaaaagattca |
507 |
Q |
| |
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||||||||| |||||| | ||||||||| ||||||| ||||||| ||||||| ||||||||||| |||| || | || |||| || |||||| ||| |
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| T |
50389028 |
tcatcaaaggtatcaatggaaaggcttcaagtagttt-ggctagcgtgcatttgacaaatttggaagaaacacaataatagattttttcaaaaagaatca |
50389126 |
T |
|
| Q |
508 |
tcggttgttgatattggtgatagggtgaaactccatc-gtggtgttggcataaagcaaaattttagacatttgttctgatctaaatcattgttggtcgaa |
606 |
Q |
| |
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| T |
50389127 |
tgggtagcggatattgtggataggg-gaaactacatttgtggtggttgcataaaacaat-ttcaagacattggttatggtctaaatcattcgtggtcgaa |
50389224 |
T |
|
| Q |
607 |
cccaattgtttgctttaaggtgaaatacttattttatcgttcgatgtaattgtcgttt |
664 |
Q |
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|||||||| |||||| | ||| |||| ||||||| | || | |||||||||||||| |
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| T |
50389225 |
cccaattgagtgctttcatgtgtaatagttatttttttctttgttgtaattgtcgttt |
50389282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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