View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_high_11 (Length: 236)
Name: NF0261_high_11
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41523268 - 41523058
Alignment:
| Q |
1 |
tgtgtcatgagtggtggtgaagggttgaaggctcaagaaagtggttgagatggcagggtctagtggtaggtagttagtcagtagtgtcgtgaacgagtag |
100 |
Q |
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| T |
41523268 |
tgtgtcatgattgttggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtag |
41523169 |
T |
|
| Q |
101 |
tgaatgagagtgggaatgtaggggatgttactgcgtacctagaaagagatggcgtgaatgaggattcttatgacctctttaggaacttatctctttgaaa |
200 |
Q |
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||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |
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| T |
41523168 |
tgaatgagagtggtaatgtaggggaggttacttcgtacctagaaagagatggcgtgaatgatcattctttcgacctctttaggaacttatctcttggaaa |
41523069 |
T |
|
| Q |
201 |
gtgttaagtat |
211 |
Q |
| |
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||||||||||| |
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| T |
41523068 |
gtgttaagtat |
41523058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41514304 - 41514094
Alignment:
| Q |
1 |
tgtgtcatgagtggtggtgaagggttgaaggctcaagaaagtggttgagatggcagggtctagtggtaggtagttagtcagtagtgtcgtgaacgagtag |
100 |
Q |
| |
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|||||||||| || |||| |||| | |||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
41514304 |
tgtgtcatgattgttggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtag |
41514205 |
T |
|
| Q |
101 |
tgaatgagagtgggaatgtaggggatgttactgcgtacctagaaagagatggcgtgaatgaggattcttatgacctctttaggaacttatctctttgaaa |
200 |
Q |
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| T |
41514204 |
tgaatgagagtggtaatgtaggggaggttacttcgtacctagaaagagatggtgtgaatgatcattcttttgacctctttaggaacttatctcttggaaa |
41514105 |
T |
|
| Q |
201 |
gtgttaagtat |
211 |
Q |
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||||| ||||| |
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| T |
41514104 |
gtgttgagtat |
41514094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 41508040 - 41507931
Alignment:
| Q |
27 |
gaaggctcaagaaagtggttgagatggcagggtcta----gtggtaggtagttagtcagtagtgtcgtgaacgagtagtgaatgagagtgggaatgtagg |
122 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| || |||||| | ||||| ||| ||| ||||| ||||||||||||| ||| ||| |
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| T |
41508040 |
gaaggctcaagaaagtggttgttatggcagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggtgatgcagg |
41507941 |
T |
|
| Q |
123 |
ggatgttact |
132 |
Q |
| |
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||| |||||| |
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| T |
41507940 |
ggaggttact |
41507931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 41502790 - 41502740
Alignment:
| Q |
27 |
gaaggctcaagaaagtggttgagatggcagggtctagtggtaggtagttag |
77 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
41502790 |
gaaggctgaagaaagtggttgttatggcagggtctagtgggagggagttag |
41502740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 41517626 - 41517582
Alignment:
| Q |
34 |
caagaaagtggttgagatggcagggtctagtggtaggtagttagt |
78 |
Q |
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| T |
41517626 |
caagaaagtggttgttatggcagggtctagtgggagggagttagt |
41517582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 2438646 - 2438703
Alignment:
| Q |
27 |
gaaggctcaagaaagtggttgagatggcagggtctagtggtaggtagttagtcagtag |
84 |
Q |
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|||||||||| |||||||||||||||||||||||| || | || |||||| ||||||| |
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| T |
2438646 |
gaaggctcaataaagtggttgagatggcagggtcttgtaggagttagttattcagtag |
2438703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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