View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_high_3 (Length: 513)
Name: NF0261_high_3
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 26956048 - 26955572
Alignment:
| Q |
16 |
atgggtggtccaactccaaataagttaagagctgaaaaaagtatatattgttcaatatgcttttggactaatggatcttacaaatgaactaagaaatgga |
115 |
Q |
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| T |
26956048 |
atgggtggtccaactccaaataagttaagagctgaaaaaagtatatattgttcaatatgcttttggactaatggatcttacaaatgaactaagaaatgga |
26955949 |
T |
|
| Q |
116 |
aaacttaggatcttaagaatatccatttcc-------tccaattttctagtttggcagtaacatgtggagctggtcaggggatcaggttaccacagagag |
208 |
Q |
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| T |
26955948 |
aaacttaggatcttaagaatatccatttcccatttcctccaattttctagtttggcagtaacatgtggtgctggtcaggggatcaggttaccacagagag |
26955849 |
T |
|
| Q |
209 |
atttcatggtccttgttgttttgcttggctacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaaatttgtatggatcgagattattcctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
26955848 |
atttcatggtccttgttgttttgcttggctacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaattttgtatggatcaagattattcctt |
26955749 |
T |
|
| Q |
309 |
gtatgggaatttatgtacgatgtttctgtggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtggttagtactacttgatt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955748 |
gtatgggaatttatgtacgatgtttctgtggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtggttagtactacttgatt |
26955649 |
T |
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| Q |
409 |
tttgccccttgttactagtgcttgttggatttgaattttatcgtatcaatttgattaattttctcatttatagaggt |
485 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26955648 |
tttgccccttgttactagttcttgttggatttgaattttatcgtatcatgttgattaattttctcatttatagaggt |
26955572 |
T |
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