View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0261_high_8 (Length: 285)
Name: NF0261_high_8
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 3299967 - 3300214
Alignment:
| Q |
33 |
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299967 |
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt |
3300066 |
T |
|
| Q |
133 |
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccattta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
3300067 |
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcattta |
3300166 |
T |
|
| Q |
225 |
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300167 |
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc |
3300214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 3392860 - 3393107
Alignment:
| Q |
33 |
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392860 |
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt |
3392959 |
T |
|
| Q |
133 |
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccattta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
3392960 |
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcattta |
3393059 |
T |
|
| Q |
225 |
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3393060 |
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc |
3393107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 1163288 - 1163164
Alignment:
| Q |
90 |
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat |
180 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || |
|
|
| T |
1163288 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at |
1163193 |
T |
|
| Q |
181 |
tatattcggcatataaagtacatttcacc |
209 |
Q |
| |
|
||||||||||||||||||| | ||||||| |
|
|
| T |
1163192 |
tatattcggcatataaagttcctttcacc |
1163164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
| Q |
54 |
tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa |
144 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850346 |
tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa |
1850444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
| Q |
201 |
catttcacctcacccttccatttactttcctgtcttccatgtgttgcact |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
39880491 |
catttcacctcaccctaccatttactttcctgtcttccatatgttgcact |
39880540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
| Q |
56 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
137 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39880327 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
39880405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
| Q |
56 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
137 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40418782 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
40418860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
| Q |
84 |
cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
137 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38988229 |
cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
38988282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
| Q |
202 |
atttcacctcacccttccatttactttcctgtcttccatgtg |
243 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25911698 |
atttcacctcaccctaccatttactttcctgtcttccatgtg |
25911657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
| Q |
101 |
tgcaatttgcaatttctgtttgatatttatgtttatt |
137 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
25911821 |
tgcagtttgcaatttctgtttgatacttatgtttatt |
25911785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 228 times since January 2019
Visitors: 2563