View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_1 (Length: 614)
Name: NF0261_low_1
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 30 - 558
Target Start/End: Complemental strand, 5768346 - 5767815
Alignment:
| Q |
30 |
tgaggtaaccgttgttagtgtgtgcgttcttgcaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccga |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768346 |
tgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccga |
5768247 |
T |
|
| Q |
130 |
caatgagaagaaaaccttactcgagagatacactgttaaagaaactcaggtcagttataaataaaattgatgaaattgtgttatttagaatgtgactaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768246 |
caatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttataaataaaattgatgaaattgtgttatttagaatgtgactaat |
5768147 |
T |
|
| Q |
230 |
cgaatgagtacacttgatggcattgtaacattgaaggaaggacaaagtgaaaatgtaaactattaggactttgttaatgttgtagtagctgatgttggat |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768146 |
cgaatgagtacacttgatggcattgtaacattgaaggaaggacaaagtgaaaatgtaaactattaggactttgttaatgttgtagtagctgatgttggat |
5768047 |
T |
|
| Q |
330 |
tgttatttgtattttagttcctctttgatgattttgttctagcttatatcattatgttaaattgtttattttctttcttttagtgtttttgttgatctgg |
429 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768046 |
tgttatttgtattttagttcctctttgatgattttgttctagcttatatcattatgttaaattgtttattttctttcttttagtgtttttgttgatctgg |
5767947 |
T |
|
| Q |
430 |
aaaatagtgaattaacttcagaatgaagtgagcatgaaagattttttcgtattcccctcgctattggtcatctcaaacccctcaaccctttctccttt-- |
527 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5767946 |
aaaatagtgaattaacttcagaatgaagtgagcatgaaagatttttgcctattcccctcgctattggtcatctcaaacccctcaaccctttctcctttaa |
5767847 |
T |
|
| Q |
528 |
-acgtcactcggtccacagccctttcctattc |
558 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
5767846 |
gacgccactcggtccacagccctttcctattc |
5767815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 5774617 - 5774405
Alignment:
| Q |
30 |
tgaggtaaccgttgttagtgtgtgcgttcttgcaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccga |
129 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| || |
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|
| T |
5774617 |
tgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactga |
5774518 |
T |
|
| Q |
130 |
caatgagaagaaaaccttactcgagagatacactgttaaagaaactcaggtcagttataaata-aaattgatgaaa--ttgtgttatttagaatgtgact |
226 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||| ||| |
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| T |
5774517 |
caatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaattttgtgttatttagaatgtaact |
5774418 |
T |
|
| Q |
227 |
aatcgaatgagta |
239 |
Q |
| |
|
||||||||||||| |
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|
| T |
5774417 |
aatcgaatgagta |
5774405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
63 |
aggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacac |
162 |
Q |
| |
|
||||||| || ||||||||||| ||| | | || | ||||||||| ||||||||| | || | |||| |||||||||||||| || ||||||||||| |
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|
| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
163 |
tgttaaagaaactcaggtcagt |
184 |
Q |
| |
|
||| || ||||||||||||||| |
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|
| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 466085 - 466130
Alignment:
| Q |
389 |
aattgtttattttctttcttttagtgtttttgttgatctggaaaat |
434 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
466085 |
aattgtttatttcctttcttttagtgcttttgttgatttggaaaat |
466130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 33142624 - 33142748
Alignment:
| Q |
60 |
tgcaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagata |
159 |
Q |
| |
|
||||||||| |||| ||||||| ||| ||| | | ||||||| ||| || ||||||||| || ||||||| |||||||||| || | ||| ||||||| |
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|
| T |
33142624 |
tgcaggaggatgaactgctggtgaacataacaaagcacgagcgtgtacctccacatcaggttctcaccgacactgagaagaaagccctgctcaagagata |
33142723 |
T |
|
| Q |
160 |
cactgttaaagaaactcaggtcagt |
184 |
Q |
| |
|
|||||| ||||| |||||||||||| |
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|
| T |
33142724 |
cactgtcaaagatactcaggtcagt |
33142748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 33137501 - 33137625
Alignment:
| Q |
60 |
tgcaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagata |
159 |
Q |
| |
|
||||||||| |||| ||||||| ||| ||| | | ||||||| ||| || ||||||||| || ||||| |||||||| | |||| ||| ||| ||| |
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|
| T |
33137501 |
tgcaggaggatgaactgctggtgaacataacaaagcacgagcgtgtacctccacatcaggttctcaccgaagctgagaagagagccttgctcaagaaata |
33137600 |
T |
|
| Q |
160 |
cactgttaaagaaactcaggtcagt |
184 |
Q |
| |
|
|||||| ||||| |||||||||||| |
|
|
| T |
33137601 |
cactgtcaaagatactcaggtcagt |
33137625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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