View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_11 (Length: 286)
Name: NF0261_low_11
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 40115373 - 40115474
Alignment:
| Q |
98 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgca |
197 |
Q |
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| T |
40115373 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgca |
40115472 |
T |
|
| Q |
198 |
ta |
199 |
Q |
| |
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|| |
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| T |
40115473 |
ta |
40115474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
104 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
193 |
Q |
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| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 42360938 - 42361002
Alignment:
| Q |
98 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
162 |
Q |
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| T |
42360938 |
catccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 3017262 - 3017198
Alignment:
| Q |
98 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
162 |
Q |
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| T |
3017262 |
catccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatca |
3017198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
128 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
163 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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