View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0261_low_12 (Length: 285)
Name: NF0261_low_12
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0261_low_12
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 3299967 - 3300214
Alignment:
Q
33
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt
132
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3299967
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt
3300066
T
Q
133
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccattta
224
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
T
3300067
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcattta
3300166
T
Q
225
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc
272
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
3300167
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc
3300214
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 3392860 - 3393107
Alignment:
Q
33
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt
132
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3392860
tttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgt
3392959
T
Q
133
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------catttcacctcacccttccattta
224
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
T
3392960
ttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccatttcacctcaccctttcattta
3393059
T
Q
225
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc
272
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
3393060
ctttcctgtcttccatgtgttgcactcaaacatggctagttttacttc
3393107
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 1163288 - 1163164
Alignment:
Q
90
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat
180
Q
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||
T
1163288
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at
1163193
T
Q
181
tatattcggcatataaagtacatttcacc
209
Q
||||||||||||||||||| | |||||||
T
1163192
tatattcggcatataaagttcctttcacc
1163164
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
Q
54
tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa
144
Q
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
T
1850346
tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa
1850444
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
Q
201
catttcacctcacccttccatttactttcctgtcttccatgtgttgcact
250
Q
|||||||||||||||| ||||||||||||||||||||||| |||||||||
T
39880491
catttcacctcaccctaccatttactttcctgtcttccatatgttgcact
39880540
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
Q
56
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt
137
Q
|||||||| || |||||||||| || ||||||||||| || |||| ||||||||||||||||||||||||||||||||
T
39880327
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt
39880405
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
Q
56
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt
137
Q
|||||||| || |||||||||| || ||||||||||| || |||| ||||||||||||||||||||||||||||||||
T
40418782
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt
40418860
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
Q
84
cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt
137
Q
||||||||||| || |||| ||||||||||||||||||||||||||||||||
T
38988229
cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt
38988282
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
Q
202
atttcacctcacccttccatttactttcctgtcttccatgtg
243
Q
||||||||||||||| ||||||||||||||||||||||||||
T
25911698
atttcacctcaccctaccatttactttcctgtcttccatgtg
25911657
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
Q
101
tgcaatttgcaatttctgtttgatatttatgtttatt
137
Q
|||| |||||||||||||||||||| |||||||||||
T
25911821
tgcagtttgcaatttctgtttgatacttatgtttatt
25911785
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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