View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_13 (Length: 282)
Name: NF0261_low_13
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 14203611 - 14203537
Alignment:
| Q |
59 |
gagccaccaatggaagaaacattggaagagaataaggaagaggagttgaaaggagttaaagttttagaagagcag |
133 |
Q |
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| T |
14203611 |
gagccacctatggaagaaacattggaagagaatgaggaagaggagttaaaaggagttaaagttttagaagagcag |
14203537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 14203447 - 14203399
Alignment:
| Q |
194 |
tacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactcttttc |
242 |
Q |
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| T |
14203447 |
tacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactcttttc |
14203399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 14183277 - 14183199
Alignment:
| Q |
164 |
tatacaatatggttgttcatgttacggtattacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactcttttc |
242 |
Q |
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| T |
14183277 |
tatacaatatggttgttcctgttaatgtattataaatcaaccgtggatcctaaaaggtaaccatcagttcactcatttc |
14183199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 21051252 - 21051326
Alignment:
| Q |
59 |
gagccaccaatggaagaaacattggaagagaataaggaagaggagttgaaaggagttaaagttttagaagagcag |
133 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||| | | |||||| ||||| |||||||||||| |
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| T |
21051252 |
gagccaccaatggaagaaacattggaagagcatgaggaagagggggcggaaggagagaaagtgttagaagagcag |
21051326 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 21074473 - 21074547
Alignment:
| Q |
59 |
gagccaccaatggaagaaacattggaagagaataaggaagaggagttgaaaggagttaaagttttagaagagcag |
133 |
Q |
| |
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|||||||||||||||||||||| ||||||| || ||||||||| | | |||||| ||||| |||||||||||| |
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| T |
21074473 |
gagccaccaatggaagaaacatgggaagagcatgaggaagagggggcggaaggagagaaagtgttagaagagcag |
21074547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 38878471 - 38878419
Alignment:
| Q |
189 |
ggtattacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactctttt |
241 |
Q |
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||||||| |||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
38878471 |
ggtattatgaatcaatcgtcgatcgtaacaggtaaccattagttcactctttt |
38878419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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