View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_14 (Length: 280)
Name: NF0261_low_14
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 5122940 - 5122876
Alignment:
| Q |
178 |
caagcttagcaaaaacaacgcacaccaagatttcattaagattcatttttaggttttcttctctct |
243 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5122940 |
caagcttagcaaaaaca-cgcacaccaagatttcattaagattcatttttaggttttcttctctct |
5122876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 5123067 - 5123027
Alignment:
| Q |
51 |
acatcatcaaacaacacaaacttacttagtactattattta |
91 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
5123067 |
acatcatcaaacaacacaaagttacttagtactattattta |
5123027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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