View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0261_low_2 (Length: 542)

Name: NF0261_low_2
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0261_low_2
NF0261_low_2
[»] chr1 (1 HSPs)
chr1 (1-532)||(46873870-46874401)


Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 46873870 - 46874401
Alignment:
Q  1 atctgaagtgtccatgatacgtatgttaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagctatgtgattcg 100  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873870 atctgaagtgtccatgatacatatgctaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagctatgtgattcg 46873969  T
Q  101 gaaggccaatacttcatggatacaaccaaaatggggtgcctcagtagtgcaattagaccctaatacttgggttcttgagtatcaaaggagctctatgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873970 gaaggccaatacttcatggatacaaccaaaatggggtgcctcggtagtgcaattagaccctaatacttgggttcttgagtatcaaaggagctctatgatt 46874069  T
Q  201 gatggtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctggcagtttgtggcat 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46874070 gattgtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctggcagtttgtggcat 46874169  T
Q  301 ttgaagataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttgaagtcaatagtagattgtggagttaaattattctca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46874170 ttgaagataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttgaagtcaatagtagattgtggagttaaattattctca 46874269  T
Q  401 atcagcgcaaagccctcatttcttgtgaggagctccaacttttttacttgtaaaggttcttttatatctttgattttatctgtcaattcttaatcaacaa 500  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46874270 atcagtgcaaagccctcatttcttgtgaggagttccaacttttttacttgtaaaggttcttttatatctttgattttatctgtcaattcttaatcaacaa 46874369  T
Q  501 tagattttgaacctcttttgtcatcccctttg 532  Q
    ||||||||||||||||||||||||||| ||||    
T  46874370 tagattttgaacctcttttgtcatcccttttg 46874401  T

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