View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_3 (Length: 531)
Name: NF0261_low_3
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 133 - 461
Target Start/End: Complemental strand, 30152018 - 30151689
Alignment:
| Q |
133 |
caataatctctattttttgggtccagatcctctccatttatttatctaattgtatctattttatcatacatggaactttctatttcttttgcgaaattga |
232 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
30152018 |
caatgatctctattttttgggtcaagatcctctccatttaattatctaattgtatctgttttatcataaatggaactttctatttcttttgcaaaattga |
30151919 |
T |
|
| Q |
233 |
gagaatctcaactcctaatttttgcttttgcaatattctttttcgtgctgaagaggagaatgagagtaaaagtcaacaatcaaattccaaaaacacaaag |
332 |
Q |
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| T |
30151918 |
gagaatctcaactcctaatttttgcttttgcaattttctttttcgtgctgaagaggagaatgagagtaaaagtcaacaatcaaattccaaaaacacaaag |
30151819 |
T |
|
| Q |
333 |
gtctgtcctcaacatataataacaagaagattcactccttcaaccaaaggttgaattctacatctaatgtcaatttagcattgccttcttttggtaaatg |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30151818 |
gtctgtcctcaacatataataacaagaagattcactccttcaaccaaaggttgaattctacatctaatgtcaatttagcatcgccttcttttggtaaatg |
30151719 |
T |
|
| Q |
433 |
aagtaa-gattaatgaatgatgtttcaact |
461 |
Q |
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| T |
30151718 |
aagtaatgattaatgaatgatgtttcaact |
30151689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 30178574 - 30178414
Alignment:
| Q |
11 |
cacagagcaagaagactatgtttatcctgaaaatgatagtggaattttggcttttttgaagctcattgagtctttacactttgaaggtaatttgtctaca |
110 |
Q |
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| T |
30178574 |
cacagagcaagaagactatgtttatcctgaaaatgatagtggaattttggcttttttgaagctcattgagtctttacactttgaaggtaatttgtctaca |
30178475 |
T |
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| Q |
111 |
tggatcttttgatttggtttagcaataatctctattttttgggtccagatcctctccattt |
171 |
Q |
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| T |
30178474 |
tggatcttttgatttggtttagcaataatctttatttttcgggtcaagatcctctctattt |
30178414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 30152324 - 30152165
Alignment:
| Q |
12 |
acagagcaagaagactatgtttatcctgaaaatgatagtggaattttggcttttttgaagctcattgagtctttacactttgaaggtaatttgtctacat |
111 |
Q |
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| T |
30152324 |
acagagcaagaagactatctttatcctgaaaatgatagtggaattttggcttttttgaagctcattgagtctttacactttgaaggtaatttgcctacat |
30152225 |
T |
|
| Q |
112 |
ggatcttttgatttggtttagcaataatctctattttttgggtccagatcctctccattt |
171 |
Q |
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| T |
30152224 |
ggatcttttgatttggtttagcaataatctctatttttctggtcaagatcctctctattt |
30152165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 30178311 - 30178155
Alignment:
| Q |
282 |
gaagaggagaatgagagtaaaagtcaacaatcaaattccaaaaacacaaaggtctgtcctcaacatataataacaagaagattcactccttcaaccaaag |
381 |
Q |
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|||||||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30178311 |
gaagaggaaaatcagagtaaaagtcaacaatcgaattccaaaaatacaaaggtttgtcctcaacatataataacaagaagattcactccttcaaccaaag |
30178212 |
T |
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| Q |
382 |
gttgaattctacatctaatgtcaatttagcattgccttcttttggtaaatgaagtaa |
438 |
Q |
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| T |
30178211 |
gttgaattctacatctaatgtcaatttagcattgctttctattcgtaaaggaagtaa |
30178155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 30152165 - 30152110
Alignment:
| Q |
219 |
ttttgcgaaattgagagaatctcaactcctaatttttgcttttgcaatattctttt |
274 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| | |||||||| ||||||| |
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|
| T |
30152165 |
ttttgcgaaattgatagaatctcaacttctaatttttacctttgcaattttctttt |
30152110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 30152062 - 30152017
Alignment:
| Q |
282 |
gaagaggagaatgagagtaaaagtcaacaatcaaattccaaaaaca |
327 |
Q |
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|||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
30152062 |
gaagaggagaatcaaagtaaaagtcaacaatcgaattccaaaaaca |
30152017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 30178414 - 30178359
Alignment:
| Q |
219 |
ttttgcgaaattgagagaatctcaactcctaatttttgcttttgcaatattctttt |
274 |
Q |
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||||| ||||||||||||||||||||| ||||||||| | |||||| | ||||||| |
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|
| T |
30178414 |
ttttgtgaaattgagagaatctcaacttctaatttttacctttgcacttttctttt |
30178359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 39847967 - 39848004
Alignment:
| Q |
208 |
ctttctatttcttttgcgaaattgagagaatctcaact |
245 |
Q |
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| T |
39847967 |
ctttctatttcttttgagaaattgagaggatctcaact |
39848004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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