View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_5 (Length: 413)
Name: NF0261_low_5
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 7463439 - 7463072
Alignment:
| Q |
18 |
catgctaaataaaaaattagcatgtgacccacccaattgcattattttttataaagaaagaaaaagaaattaccatgtgactctcaattgcatttaaacg |
117 |
Q |
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| T |
7463439 |
catgctaaataaaaaattagcatgtgaccaacccaattgcattattttttataaagaaagaaaaagaaattaccacgtgaccctcaattgcatttaaacg |
7463340 |
T |
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| Q |
118 |
tgttgttaattactagtggtgaataaaagaaatcatctcttttggactaaccttgagattccaatcccattcaactactatagatactaagcacccccca |
217 |
Q |
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| T |
7463339 |
tgttgttaattactagtggtgaataaaagaaatcatctcttttagactaaccttgagattccaatcccattcaactactatagatactaagcac-cccca |
7463241 |
T |
|
| Q |
218 |
tggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaagatgttttcaggggtaactggtctctttgata |
317 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7463240 |
tggttacaagacacaggcatttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaagatgttttcaggggtaactggtctctttgata |
7463141 |
T |
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| Q |
318 |
gaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatgcgttggacattgatgccctaactg |
386 |
Q |
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| T |
7463140 |
gaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatgcgttggacattgatgccctaactg |
7463072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 188 - 361
Target Start/End: Complemental strand, 6356168 - 6355996
Alignment:
| Q |
188 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaaga |
287 |
Q |
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| T |
6356168 |
tcaactactataaatactaaccacccct-atggttacaagacacaagcctttctttcatttaccatatatagtgtaatacatttaaagcatattcaaaga |
6356070 |
T |
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| Q |
288 |
tgttttcaggggtaactggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaat |
361 |
Q |
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| T |
6356069 |
tgttttctggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaat |
6355996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 362
Target Start/End: Complemental strand, 6365598 - 6365429
Alignment:
| Q |
188 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaaga |
287 |
Q |
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|||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||| | ||||| |
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| T |
6365598 |
tcaactactataaatactaagcatcccct-tggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacattt-aagca---ttaaaga |
6365504 |
T |
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| Q |
288 |
tgttttcaggggtaactggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatg |
362 |
Q |
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| T |
6365503 |
tgagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaatg |
6365429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 6373262 - 6373177
Alignment:
| Q |
188 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
273 |
Q |
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|||| ||||||| ||| |||||| |||| ||||||||||||||||| | |||||||||||| |||| ||||||||||| |||||| |
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| T |
6373262 |
tcaagtactataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaa |
6373177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 6412318 - 6412233
Alignment:
| Q |
188 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
273 |
Q |
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|||| ||||||| |||||||||| ||| || ||||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| |
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| T |
6412318 |
tcaagtactataaatactaagcatcccacaaggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6412233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 6393153 - 6393093
Alignment:
| Q |
213 |
ccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
273 |
Q |
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||||||||||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| |
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| T |
6393153 |
ccccatggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6393093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 6426680 - 6426642
Alignment:
| Q |
324 |
aaaagttgaagggaactgtggtgttgatgcaaaagaatg |
362 |
Q |
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| T |
6426680 |
aaaagttaaagggaactgtggtgttgatgcaaaagaatg |
6426642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 6373667 - 6373618
Alignment:
| Q |
217 |
atggttacaagacacaagcttttctttcatttaccaaatatagtgtaata |
266 |
Q |
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||||||| ||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
6373667 |
atggttaaaagacacaagcttttctttcattagccaaagatattgtaata |
6373618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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