View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_6 (Length: 407)
Name: NF0261_low_6
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 35 - 395
Target Start/End: Original strand, 637483 - 637848
Alignment:
| Q |
35 |
actatcaatttccatttttggtaaaacaataagaaagagatttttattcacnnnnnnnnnnnnngaggtttgattttactctgaaatttgtaataaaaaa |
134 |
Q |
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| T |
637483 |
actatcaatttccatttttggtaaaacaataagaaggagatttttatttacaaaaaataaaaaagaggtttgattttactctgaaatttgtaataaaaaa |
637582 |
T |
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| Q |
135 |
gattattcgtgcagannnnnnnacaaatttttcgtgtagaatttttgtttaacaaaagatagcaacatgtaatttaattttggatagtaccctggcctga |
234 |
Q |
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| T |
637583 |
gattattcgtgcagatttttttacaaatttttcgtgtagaatttttgtttaacgaaagatagcaacatgtaatttaattttggatagtaccctggcctga |
637682 |
T |
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| Q |
235 |
tcgat------atgcacaattacaagttgtgaaatgctaccccactcttaccggtattaacataatttaatcannnnnnnnngctgttgagatcttaatt |
328 |
Q |
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| T |
637683 |
tcgatactgcgatgcacaattacaagttgtgaaatgctaccccactcttaccggtattaacataatttaatca-ttttttttgctgttgagatcttaatt |
637781 |
T |
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| Q |
329 |
tacttttaatgcaagattaagatttgtttcatgtattgaatgatattgtctcatgaaaagtgatatt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
637782 |
tacttttaatgcaagattaagatttgtttcatgtattgaatgatattgtctcatgaaaagtgatatt |
637848 |
T |
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