View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_7 (Length: 402)
Name: NF0261_low_7
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 41523405 - 41523785
Alignment:
| Q |
1 |
ctttctcagcatgtttgttctgcaactgagtcaatacatgtcttgtccattgcatatggcgaagaaaaacctccctagaaccaaaatttatttgaggttt |
100 |
Q |
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| T |
41523405 |
ctttctcagcatgtttgttctgcaactgagtcaatacatgtcttgtcaattgcatatggtgaagaaaaacctccctagaaccaaaatttatttgaggttt |
41523504 |
T |
|
| Q |
101 |
tacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatagaataaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41523505 |
tacagttcatgtcaacactacttccatttccataggaaaatcagtttcagctaaaatgaaaaagtcaatagcttgcttggattgagtaacatagaataaa |
41523604 |
T |
|
| Q |
201 |
gatgtgtttcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| | |
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| T |
41523605 |
gatgtgtttcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctaccaagcaatctgatctaacatttatctgatcacacataaattca |
41523704 |
T |
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| Q |
301 |
atatttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatg |
381 |
Q |
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| T |
41523705 |
atatttatcaagtaacattaaaaaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatg |
41523785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 204 - 381
Target Start/End: Original strand, 41514656 - 41514834
Alignment:
| Q |
204 |
gtgtttcaatagtcaatttataaaa-caagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
302 |
Q |
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| T |
41514656 |
gtgtttcaatagtcaatctataaaaacaataaaatcatgtaccaggccaatctacctagcaatctgatcaaacatttatccgatcacacataaattcaat |
41514755 |
T |
|
| Q |
303 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
41514756 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatg |
41514834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 41514390 - 41514502
Alignment:
| Q |
92 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaaca |
191 |
Q |
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| T |
41514390 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcagctaaaatgaaagagtcaatagcttgcttgggttgagtaaca |
41514489 |
T |
|
| Q |
192 |
tagaataaagatg |
204 |
Q |
| |
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| |||||||||| |
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|
| T |
41514490 |
tgtaataaagatg |
41514502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 41469011 - 41469105
Alignment:
| Q |
295 |
aatttaatatttatcaagtaacattaaaaaatgcatatctttataggaataagata--------tgcatgcataatttccatatacctgatgatg |
381 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||| || |||||||||| | | ||||||||||||||| ||||||||||||||| |
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| T |
41469011 |
aattcaatatttataaagtaatattaaaaaatgcataactacataggaataatagaataatagatgcatgcataatttcgatatacctgatgatg |
41469105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 364
Target Start/End: Original strand, 33079263 - 33079303
Alignment:
| Q |
325 |
atgcatatctttataggaa-taagatatgcatgcataattt |
364 |
Q |
| |
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| T |
33079263 |
atgcatatctttataggaattaagatatgtatgcataattt |
33079303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 41703312 - 41703284
Alignment:
| Q |
353 |
catgcataatttccatatacctgatgatg |
381 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
41703312 |
catgcataatttccatatacctgatgatg |
41703284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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