View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0261_low_8 (Length: 401)
Name: NF0261_low_8
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0261_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 41523429 - 41523058
Alignment:
| Q |
1 |
ttgcagaacaaacatgctgagaaagctactttggaagataaattaatgaggcgaagcacaaatttcagccttgagacagggctgtgcttcaggagcccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
41523429 |
ttgcagaacaaacatgctgagaaagctactttggaagataaattaatgaggcgaagcactaatttcagccttgagacagggctgcgcttcaggagcccaa |
41523330 |
T |
|
| Q |
101 |
aaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaactgtgtcatgattgttggtcaaggctagaaggctcaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41523329 |
aaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaattgtgtcatgattgttggtcaaggctagaaggctcaagaa |
41523230 |
T |
|
| Q |
201 |
agtggttgagatgccagggtctagtggtaggtagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtaggggaggttacttcgtacc |
300 |
Q |
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| T |
41523229 |
agtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtaggggaggttacttcgtacc |
41523130 |
T |
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| Q |
301 |
tagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttaagtat |
372 |
Q |
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| T |
41523129 |
tagaaagagatggcgtgaatgatcattctttcgacctctttaggaacttatctcttggaaagtgttaagtat |
41523058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 76 - 372
Target Start/End: Complemental strand, 41514390 - 41514094
Alignment:
| Q |
76 |
acagggctgtgcttcaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaactgtgtcatgattgt |
175 |
Q |
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| T |
41514390 |
acagggctgtgcttcaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattctagaccaattgtgtcatgattgt |
41514291 |
T |
|
| Q |
176 |
tggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtagtgtcgtgaacgagtagtgaatgagagtggt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41514290 |
tggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtagtgaatgagagtggt |
41514191 |
T |
|
| Q |
276 |
aatgtaggggaggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttaagtat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41514190 |
aatgtaggggaggttacttcgtacctagaaagagatggtgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttgagtat |
41514094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 351
Target Start/End: Complemental strand, 41508041 - 41507873
Alignment:
| Q |
187 |
agaaggctcaagaaagtggttgagatgccagggtcta----gtggtaggtagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtag |
282 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||| |||| || |||||||| ||||| ||| ||| ||||| |||||||||||||| ||| || |
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| T |
41508041 |
agaaggctcaagaaagtggttgttatggcagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggtgatgcag |
41507942 |
T |
|
| Q |
283 |
gggaggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttat |
351 |
Q |
| |
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| T |
41507941 |
gggaggttacttagaatttagaaacagatgttgtggatgattatccttttttcctctttaggagcttat |
41507873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 41517626 - 41517523
Alignment:
| Q |
195 |
caagaaagtggttgagatgccagggtctagtggtagg----tagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtaggggaggtt |
290 |
Q |
| |
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|||||||||||||| ||| ||||||||||||| ||| |||||||| || || |||| ||| |||| |||||||||||||| ||| |||||||||| |
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| T |
41517626 |
caagaaagtggttgttatggcagggtctagtgggagggagttagttatttagcagcgtcgagaaatagtactgaatgagagtggttatgcaggggaggtt |
41517527 |
T |
|
| Q |
291 |
actt |
294 |
Q |
| |
|
|||| |
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| T |
41517526 |
actt |
41517523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 2438645 - 2438703
Alignment:
| Q |
187 |
agaaggctcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtag |
245 |
Q |
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||||||||||| ||||||||||||||| |||||||| || | || |||||||||||||| |
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| T |
2438645 |
agaaggctcaataaagtggttgagatggcagggtcttgtaggagttagttattcagtag |
2438703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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