View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0261_low_9 (Length: 301)

Name: NF0261_low_9
Description: NF0261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0261_low_9
NF0261_low_9
[»] chr4 (9 HSPs)
chr4 (93-283)||(566608-566798)
chr4 (210-262)||(5035628-5035680)
chr4 (211-265)||(12124827-12124881)
chr4 (96-137)||(1523994-1524035)
chr4 (211-256)||(12126892-12126937)
chr4 (222-262)||(2367689-2367729)
chr4 (210-262)||(2460603-2460655)
chr4 (210-262)||(2486313-2486365)
chr4 (210-262)||(2525763-2525815)
[»] chr6 (9 HSPs)
chr6 (184-283)||(12097396-12097495)
chr6 (216-256)||(6437161-6437201)
chr6 (204-268)||(7132543-7132607)
chr6 (204-268)||(7135466-7135530)
chr6 (210-268)||(6395775-6395833)
chr6 (96-137)||(9412454-9412495)
chr6 (99-140)||(14810041-14810082)
chr6 (212-269)||(14821621-14821678)
chr6 (204-268)||(6427422-6427486)
[»] chr7 (4 HSPs)
chr7 (204-265)||(15091350-15091411)
chr7 (204-268)||(10168807-10168871)
chr7 (204-268)||(10176332-10176396)
chr7 (210-268)||(7978108-7978165)
[»] chr3 (2 HSPs)
chr3 (99-137)||(51120330-51120368)
chr3 (204-268)||(51763147-51763211)
[»] chr5 (3 HSPs)
chr5 (213-262)||(32268776-32268825)
chr5 (204-279)||(41900251-41900326)
chr5 (99-137)||(41886296-41886334)
[»] chr1 (3 HSPs)
chr1 (222-262)||(15837976-15838016)
chr1 (204-268)||(33161433-33161497)
chr1 (96-133)||(7561347-7561384)
[»] chr8 (1 HSPs)
chr8 (204-262)||(32152212-32152270)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 93 - 283
Target Start/End: Complemental strand, 566798 - 566608
Alignment:
Q  93 gacttttatttacctgatgactgttgggaacgtgtcttcaaattcatcgtcaccaacaaattcatcatcagcaacgaatacagaaacaagaatcgtgata 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566798 gacttttatttacctgatgactgttgggaacgtgtcttcaaattcatcgtcaccaacaaattcatcatcagcaacgaatacagaaacaagaatcgtgata 566699  T
Q  193 attacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtgctcc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  566698 attacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcacttgctatctgtactcc 566608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  210 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    ||||| ||||| || || ||||||||||||||||||||| |||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 12124881 - 12124827
Alignment:
Q  211 ctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttc 265  Q
    |||||||| | ||||||||||| ||||||||||||||| ||||||| | ||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttc 12124827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 1523994 - 1524035
Alignment:
Q  96 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 137  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  1523994 ttttacttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  211 ctctctccttagtctccaaacagtttctctccatcaccgaccgtct 256  Q
    |||||||| | ||||||||||| ||||||||||||||| |||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 2367689 - 2367729
Alignment:
Q  222 gtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    ||||||||||| ||||||||||||||| ||||||| |||||    
T  2367689 gtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 2460655 - 2460603
Alignment:
Q  210 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    ||||||||| | |||||||||||||| |||||||||||| | ||||| |||||    
T  2460655 tctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgatt 2460603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  210 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    ||||||||| | ||||| ||||||||||| ||||||||| ||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 2525815 - 2525763
Alignment:
Q  210 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    ||||||||| | ||||| ||||||||||| ||||||||| || ||||||||||    
T  2525815 tctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 12097495 - 12097396
Alignment:
Q  184 atcgtgataattacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtgctcc 283  Q
    ||||||||  ||||||||  |||||||||||||| |||||||||||||| ||||||| |||||  ||||||||||||||||||||| |||||||| ||||    
T  12097495 atcgtgatcgttacttgactttgaattctctctctttagtctccaaacaatttctcttcatcagagaccgtcttcgattttcacttactatctgtactcc 12097396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 6437201 - 6437161
Alignment:
Q  216 tccttagtctccaaacagtttctctccatcaccgaccgtct 256  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  6437201 tccttagtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 7132607 - 7132543
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||| || || ||||||||| |||| |||||||||| |||||||| |||||| |||||    
T  7132607 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact 7132543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 7135530 - 7135466
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||| || || ||||||||| |||| |||||||||| |||||||| |||||| |||||    
T  7135530 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact 7135466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 6395833 - 6395775
Alignment:
Q  210 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||| | |||||||| ||||| |||||||||||| | | |||||||||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgattttcact 6395775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 9412495 - 9412454
Alignment:
Q  96 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 137  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  9412495 ttttatttacctgatgaatgttgggaaagtatcttcaaattc 9412454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 14810082 - 14810041
Alignment:
Q  99 tatttacctgatgactgttgggaacgtgtcttcaaattcatc 140  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  14810082 tatttacctgatgagtgttgggaacgtgtctttagattcatc 14810041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 14821678 - 14821621
Alignment:
Q  212 tctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcactt 269  Q
    ||||||| | |||||||| ||||| ||||| |||||| | ||||||||||||||||||    
T  14821678 tctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgattttcactt 14821621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 6427486 - 6427422
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    |||| |||||||||| | |||||||| ||||| |||||||||||| | ||||||| | |||||||    
T  6427486 ttgagttctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttcaaatttcact 6427422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 15091350 - 15091411
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttc 265  Q
    ||||||||||||||| | |||||||||||||| |||||||||||| || |||||| ||||||    
T  15091350 ttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttc 15091411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 10168807 - 10168871
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| ||  ||||||||| |||||    
T  10168807 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcact 10168871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 10176332 - 10176396
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| ||  ||||||||| |||||    
T  10176332 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcact 10176396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 7978165 - 7978108
Alignment:
Q  210 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||| ||||| |  |||||||||||||||||| |||||||| ||||||||||    
T  7978165 tctctctccttcgtctc-atgcagtttctctccatcaccaaccgtcttagattttcact 7978108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 51120330 - 51120368
Alignment:
Q  99 tatttacctgatgactgttgggaacgtgtcttcaaattc 137  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaattc 51120368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 51763147 - 51763211
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||||||| | || ||||||||||| |||||||||||| ||||| | ||||| |||||    
T  51763147 ttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctcact 51763211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 32268825 - 32268776
Alignment:
Q  213 ctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    |||||| | |||||||||||||| |||||||||||| |||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 32268776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 41900251 - 41900326
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtg 279  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||| ||  ||||||||| || ||| | |||||||    
T  41900251 ttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctcttacaatctgtg 41900326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 41886296 - 41886334
Alignment:
Q  99 tatttacctgatgactgttgggaacgtgtcttcaaattc 137  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattc 41886334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 15837976 - 15838016
Alignment:
Q  222 gtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 33161497 - 33161433
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 268  Q
    ||||||||||| ||| | ||||||||||||||||||||||||||  |  |||||||||| |||||    
T  33161497 ttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcact 33161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 7561384 - 7561347
Alignment:
Q  96 ttttatttacctgatgactgttgggaacgtgtcttcaa 133  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  7561384 ttttatttacctgatgactgttggaaacatgtcttcaa 7561347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 32152270 - 32152212
Alignment:
Q  204 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 262  Q
    |||||||| |||||| | |||||||||||||| |||||||||||| || |||| |||||    
T  32152270 ttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 575 times since January 2019
Visitors: 2567