View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0263-INSERTION-11 (Length: 290)

Name: NF0263-INSERTION-11
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0263-INSERTION-11
NF0263-INSERTION-11
[»] chr1 (15 HSPs)
chr1 (8-287)||(13161843-13162122)
chr1 (8-287)||(13130150-13130429)
chr1 (8-287)||(13094721-13095000)
chr1 (8-279)||(30367704-30367978)
chr1 (25-180)||(13101339-13101494)
chr1 (25-136)||(13007539-13007650)
chr1 (25-137)||(13069917-13070029)
chr1 (25-181)||(13214158-13214314)
chr1 (25-180)||(19727492-19727647)
chr1 (242-279)||(13010797-13010834)
chr1 (25-154)||(13064937-13065066)
chr1 (242-279)||(13205015-13205052)
chr1 (20-133)||(13271923-13272036)
chr1 (8-94)||(13244302-13244388)
chr1 (242-279)||(13069787-13069824)
[»] chr6 (1 HSPs)
chr6 (8-133)||(31396420-31396546)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 13161843 - 13162122
Alignment:
Q  8 ctcttgaatgcttttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccata 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161843 ctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccata 13161942  T
Q  108 gtgagtgcagtgtctctaagatacttctcactgatttccccttttccatatccttctatctttagggcttttaccatgcctaaaaaacattggtccattt 207  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13161943 gtgagtgcagtatctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccattt 13162042  T
Q  208 cttcattgctgcatttgctttgctcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagatattattgg 287  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13162043 cttcgttgctgcatttgctttgctcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagatattcttgg 13162122  T

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Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 13130150 - 13130429
Alignment:
Q  8 ctcttgaatgcttttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccata 107  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  13130150 ctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaaaaacata 13130249  T
Q  108 gtgagtgcagtgtctctaagatacttctcactgatttccccttttccatatccttctatctttagggcttttaccatgcctaaaaaacattggtccattt 207  Q
    || | |||||| |||||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  13130250 gtaaatgcagtatctctaagatacttctcactgatttcaccctttccatatccttcattctttagggcttttaccatgcctaaaaaacattggtccattt 13130349  T
Q  208 cttcattgctgcatttgctttgctcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagatattattgg 287  Q
    |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13130350 cttcatcgctgcacttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgg 13130429  T

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Target: chr1; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 13094721 - 13095000
Alignment:
Q  8 ctcttgaatgcttttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccata 107  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  13094721 ctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcata 13094820  T
Q  108 gtgagtgcagtgtctctaagatacttctcactgatttccccttttccatatccttctatctttagggcttttaccatgcctaaaaaacattggtccattt 207  Q
    || | ||||||||||||||||||||||||||||||||| || ||||||| ||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  13094821 gtaaatgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcattctttagggcttttaccatgcctaaaaaacattggtacattt 13094920  T
Q  208 cttcattgctgcatttgctttgctcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagatattattgg 287  Q
    |||||| |||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13094921 cttcatagctgcacttactttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgg 13095000  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 30367978 - 30367704
Alignment:
Q  8 ctcttgaatgcttttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccata 107  Q
    |||||||||  ||||  ||||||||||||||| ||||||||  |||||||||||||||||||||  |||||||| ||  ||||| || || ||||  | |    
T  30367978 ctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccattacctgctaacaaaaga 30367879  T
Q  108 gtgagtgcagtgtctctaagatacttctcactgatttccccttttccatatccttctatctttagggcttttaccatgcctaaaaaacattggtccattt 207  Q
    | ||||||| |||||||||||||||||||||| | | || | |||||| | |||||  || | || |||||||| | |   ||| || |||  |||||||    
T  30367878 gagagtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttacaaagttgaaataagattcatccattt 30367779  T
Q  208 cttca---ttgctgcatttgctttgctcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagat 279  Q
    |||||    ||||||| ||||||| |||||| |    || |||||||| ||||||||||||||||||||||||||    
T  30367778 cttcactgctgctgcacttgcttttctcttcgcgtttggcaaatgttacactttcatacaagaatcggtcaagat 30367704  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 13101339 - 13101494
Alignment:
Q  25 cttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtgtctct 124  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||||||||||||||||| ||  |||||||| || || |  | ||||| | || |||||||    
T  13101339 cttccacaataggatgagtggaaacaagccagaaaaaccaactgagagctgaactaactgggccatttcctgctaaaaagagagtgattacattgtctct 13101438  T
Q  125 aagatacttctcactgatttccccttttccatatccttctatctttagggctttta 180  Q
    |||||||||||||   |||||||| |||||| |||||||  || |||| |||||||    
T  13101439 aagatacttctcatccatttccccctttccagatccttccttcgttagtgctttta 13101494  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 13007539 - 13007650
Alignment:
Q  25 cttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtgtctct 124  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||||||||  |||||||| || || |  | ||||||  || |||||||    
T  13007539 cttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaactaattgtgccatttcctgctaaaaagagagtgaggacattgtctct 13007638  T
Q  125 aagatacttctc 136  Q
    ||||||||||||    
T  13007639 aagatacttctc 13007650  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 13070029 - 13069917
Alignment:
Q  25 cttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtgtctct 124  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||| ||||| ||| ||  |||||||| || || |  | || ||||||| |||||||    
T  13070029 cttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctgctaaaaagagagagagtgcattgtctct 13069930  T
Q  125 aagatacttctca 137  Q
    |||||||||||||    
T  13069929 aagatacttctca 13069917  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 13214158 - 13214314
Alignment:
Q  25 cttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtgtctct 124  Q
    ||||||||||| ||| ||||||||  ||||||||||||||| ||||| |||||| || ||  |||||||| || || |  | |||||  ||| |||||||    
T  13214158 cttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgctaaaaagagagtgatcgcattgtctct 13214257  T
Q  125 aagatacttctcactgatttccccttttccatatccttctatctttagggcttttac 181  Q
    |||||||||||||   |||||||| |||||| |||||||  || |||| ||||||||    
T  13214258 aagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac 13214314  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 19727492 - 19727647
Alignment:
Q  25 cttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtgtctct 124  Q
    |||| |||||||||| ||| ||||  ||||| ||||||||||||||| ||| ||||| ||  |||||||| || || |  | |||||||  | |||||||    
T  19727492 cttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctgtactaactgggccatttcctgctaaaaagagagtgagtaaattgtctct 19727591  T
Q  125 aagatacttctcactgatttccccttttccatatccttctatctttagggctttta 180  Q
    ||||||||||||| | |||||||| |||||| |||||||  || |||| |||||||    
T  19727592 aagatacttctcattcatttccccctttccagatccttccttcattagtgctttta 19727647  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 13010797 - 13010834
Alignment:
Q  242 ggaaaatgttatactttcatacaagaatcggtcaagat 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13010797 ggaaaatgttatactttcatacaagaatcggtcaagat 13010834  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 13065066 - 13064937
Alignment:
Q  25 cttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtgtctct 124  Q
    ||||||||| ||||| |  |||||  ||||| || |||||||||||| ||||||||| ||  || ||||| || ||||  | | ||| ||||||||||||    
T  13065066 cttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccgtttcccgctaacaatagattgactgcagtgtctct 13064967  T
Q  125 aagatacttctcactgatttccccttttcc 154  Q
    |||||||||||||||  ||| |||||||||    
T  13064966 aagatacttctcactcgttttcccttttcc 13064937  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 13205015 - 13205052
Alignment:
Q  242 ggaaaatgttatactttcatacaagaatcggtcaagat 279  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  13205015 ggaaaatgttatactttcatataagaatcggtcaagat 13205052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 13271923 - 13272036
Alignment:
Q  20 tttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtg 119  Q
    |||| |||||||| |||||| ||||||||  ||||| || |||||||| ||| ||||||||| ||  |||||||| |||  ||  | ||||| |||||||    
T  13271923 ttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcctgcagccaagagagtgaatgcagtg 13272022  T
Q  120 tctctaagatactt 133  Q
    ||||||| ||||||    
T  13272023 tctctaatatactt 13272036  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 13244388 - 13244302
Alignment:
Q  8 ctcttgaatgcttttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttcc 94  Q
    |||||||||  ||||  ||||| ||||||||| ||||||||  ||||| || |||||||| ||| ||||||||||||  ||||||||    
T  13244388 ctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcc 13244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 13069824 - 13069787
Alignment:
Q  242 ggaaaatgttatactttcatacaagaatcggtcaagat 279  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  13069824 ggaaaatgttataccttcatacaagaaacggtcaagat 13069787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 31396546 - 31396420
Alignment:
Q  8 ctcttgaatgcttttttcttccacaataggataagttgaaagga-gccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccat 106  Q
    |||||||||  ||||  |||||||| |||||| ||||||||  | ||||||||||||||| ||||  |||||||||||  |||||||| || ||||  |     
T  31396546 ctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcctgctaacaaaag 31396447  T
Q  107 agtgagtgcagtgtctctaagatactt 133  Q
    || |||  || ||||||||||||||||    
T  31396446 agagagcacattgtctctaagatactt 31396420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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