View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0263-INSERTION-12 (Length: 428)

Name: NF0263-INSERTION-12
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0263-INSERTION-12
NF0263-INSERTION-12
[»] chr5 (19 HSPs)
chr5 (144-315)||(591189-591360)
chr5 (146-312)||(27146845-27147011)
chr5 (144-312)||(23129319-23129483)
chr5 (147-306)||(42265415-42265574)
chr5 (147-314)||(40872211-40872376)
chr5 (147-315)||(13978601-13978768)
chr5 (151-314)||(39046907-39047069)
chr5 (147-284)||(40458940-40459076)
chr5 (160-290)||(41520657-41520790)
chr5 (192-312)||(8415663-8415783)
chr5 (171-308)||(4377947-4378083)
chr5 (257-315)||(2112515-2112572)
chr5 (222-315)||(15699964-15700056)
chr5 (217-315)||(10051700-10051798)
chr5 (257-315)||(248540-248598)
chr5 (217-315)||(8247037-8247135)
chr5 (258-315)||(17436991-17437048)
chr5 (258-315)||(19113708-19113765)
chr5 (263-315)||(13129167-13129219)
[»] chr1 (24 HSPs)
chr1 (144-315)||(43492094-43492265)
chr1 (144-315)||(45925462-45925634)
chr1 (144-315)||(25670736-25670907)
chr1 (144-312)||(698791-698959)
chr1 (145-315)||(3483010-3483180)
chr1 (145-315)||(49003618-49003789)
chr1 (147-315)||(31822358-31822526)
chr1 (144-290)||(44958272-44958416)
chr1 (144-312)||(28188595-28188762)
chr1 (185-309)||(30494034-30494158)
chr1 (146-271)||(5224848-5224973)
chr1 (262-314)||(5225156-5225208)
chr1 (258-312)||(11411046-11411100)
chr1 (214-315)||(34861247-34861348)
chr1 (221-315)||(5799625-5799718)
chr1 (217-315)||(34445639-34445737)
chr1 (257-314)||(11109460-11109517)
chr1 (278-311)||(14758661-14758694)
chr1 (258-315)||(19547128-19547185)
chr1 (253-314)||(35259120-35259181)
chr1 (221-314)||(35508361-35508454)
chr1 (242-315)||(40377012-40377085)
chr1 (223-283)||(29523601-29523661)
chr1 (242-290)||(46803510-46803558)
[»] chr2 (16 HSPs)
chr2 (163-315)||(18375032-18375184)
chr2 (146-290)||(27501702-27501846)
chr2 (207-315)||(32493101-32493208)
chr2 (192-291)||(44330642-44330744)
chr2 (149-314)||(63856-64017)
chr2 (192-274)||(44365416-44365498)
chr2 (257-315)||(43745594-43745652)
chr2 (261-315)||(12133502-12133556)
chr2 (219-286)||(9153514-9153581)
chr2 (263-314)||(28572658-28572709)
chr2 (263-313)||(15120131-15120181)
chr2 (275-312)||(433606-433643)
chr2 (242-291)||(44769133-44769182)
chr2 (275-315)||(20683093-20683133)
chr2 (151-191)||(32493059-32493099)
chr2 (275-315)||(44941177-44941216)
[»] chr8 (16 HSPs)
chr8 (144-315)||(33649978-33650149)
chr8 (146-315)||(44254095-44254263)
chr8 (176-315)||(34336470-34336608)
chr8 (183-273)||(15271030-15271120)
chr8 (147-312)||(38236225-38236382)
chr8 (170-273)||(42704317-42704420)
chr8 (146-312)||(44042510-44042675)
chr8 (183-305)||(9774726-9774849)
chr8 (207-305)||(43429669-43429767)
chr8 (258-312)||(4166468-4166522)
chr8 (254-315)||(20142514-20142575)
chr8 (258-315)||(37231417-37231474)
chr8 (276-315)||(6904151-6904190)
chr8 (186-312)||(39691121-39691247)
chr8 (182-314)||(1876485-1876617)
chr8 (223-315)||(28460036-28460128)
[»] chr6 (6 HSPs)
chr6 (146-315)||(24797383-24797552)
chr6 (144-315)||(29407973-29408145)
chr6 (165-275)||(9975038-9975148)
chr6 (192-291)||(22020534-22020636)
chr6 (192-274)||(22055031-22055113)
chr6 (146-278)||(10345961-10346093)
[»] chr7 (17 HSPs)
chr7 (147-315)||(5248601-5248769)
chr7 (146-315)||(17883279-17883449)
chr7 (152-312)||(47405203-47405363)
chr7 (144-290)||(26803984-26804128)
chr7 (156-297)||(26402759-26402900)
chr7 (147-315)||(41514259-41514418)
chr7 (200-315)||(6387974-6388089)
chr7 (183-315)||(33899740-33899872)
chr7 (242-315)||(15034862-15034934)
chr7 (258-315)||(17302861-17302918)
chr7 (258-315)||(27076210-27076267)
chr7 (258-315)||(27202034-27202091)
chr7 (211-256)||(39960413-39960458)
chr7 (254-315)||(44319930-44319991)
chr7 (257-315)||(21512995-21513051)
chr7 (254-315)||(5907795-5907855)
chr7 (181-315)||(44452043-44452176)
[»] chr4 (31 HSPs)
chr4 (147-315)||(46521474-46521642)
chr4 (146-312)||(5047177-5047343)
chr4 (145-290)||(21988428-21988574)
chr4 (183-315)||(28695736-28695868)
chr4 (165-315)||(54495449-54495601)
chr4 (199-315)||(49360014-49360130)
chr4 (183-296)||(46088520-46088633)
chr4 (164-312)||(20787367-20787514)
chr4 (173-315)||(20180217-20180359)
chr4 (144-267)||(30161314-30161435)
chr4 (198-312)||(20176583-20176697)
chr4 (144-289)||(33266784-33266930)
chr4 (147-290)||(48079245-48079375)
chr4 (148-312)||(24753900-24754065)
chr4 (198-315)||(34124537-34124653)
chr4 (191-315)||(23135445-23135569)
chr4 (162-285)||(25751684-25751807)
chr4 (146-263)||(5091811-5091926)
chr4 (198-315)||(41690168-41690287)
chr4 (206-315)||(49587736-49587845)
chr4 (146-246)||(10042885-10042985)
chr4 (144-195)||(23135379-23135430)
chr4 (254-312)||(13404136-13404194)
chr4 (265-315)||(30161460-30161510)
chr4 (221-315)||(49532293-49532386)
chr4 (242-315)||(27346268-27346341)
chr4 (246-315)||(31655473-31655542)
chr4 (259-312)||(40071282-40071335)
chr4 (259-308)||(43809127-43809176)
chr4 (254-315)||(49795115-49795176)
chr4 (258-315)||(50131030-50131087)
[»] chr3 (16 HSPs)
chr3 (144-309)||(53641639-53641804)
chr3 (144-312)||(32734654-32734822)
chr3 (172-315)||(53605624-53605767)
chr3 (165-315)||(11465611-11465761)
chr3 (197-311)||(52299014-52299130)
chr3 (171-312)||(4275199-4275340)
chr3 (210-315)||(52380856-52380961)
chr3 (242-308)||(23554737-23554802)
chr3 (165-308)||(30364038-30364180)
chr3 (206-292)||(53040462-53040548)
chr3 (242-292)||(2831540-2831590)
chr3 (258-316)||(3973782-3973840)
chr3 (258-316)||(4009565-4009623)
chr3 (277-315)||(7278263-7278301)
chr3 (241-287)||(47915016-47915062)
chr3 (246-315)||(53766759-53766828)
[»] scaffold0018 (2 HSPs)
scaffold0018 (192-309)||(48755-48872)
scaffold0018 (147-197)||(49013-49063)
[»] scaffold0019 (1 HSPs)
scaffold0019 (209-296)||(67446-67533)
[»] scaffold0182 (1 HSPs)
scaffold0182 (276-315)||(19660-19699)
[»] scaffold0608 (1 HSPs)
scaffold0608 (257-314)||(4897-4954)
[»] scaffold0172 (1 HSPs)
scaffold0172 (258-314)||(13436-13492)
[»] scaffold0011 (1 HSPs)
scaffold0011 (221-309)||(219166-219254)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 591189 - 591360
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||    
T  591189 gggaaatgttaacaagtgctcttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttt 591288  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
     ||||||| |||| ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  591289 cgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagac 591360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 146 - 312
Target Start/End: Complemental strand, 27147011 - 27146845
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27147011 gaaatgttaacaaatgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattagagttttta 27146912  T
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    |||||| |||| ||||||||||||||||  ||||||||||||||| | |||||| ||||||||||||    
T  27146911 acttttttaaagaataatttctttattagaaatccttaaagagtgcctttaggggactcgttaacaa 27146845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 23129483 - 23129319
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||| ||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  23129483 gggaaatgttaacaaatgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttt 23129384  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    |||||||| ||||||||||||||||||||| |||||    ||||||  ||||||| |||||||||||||    
T  23129383 tgactttt-taaaaaataatttctttattaggaatc---taagagtacccttaggacactcgttaacaa 23129319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 147 - 306
Target Start/End: Complemental strand, 42265574 - 42265415
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||| |||||  | |||||||    
T  42265574 aaatgttaacaagtgcccttaggacattgtttagtaactttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaaattgaaatttttga 42265475  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgt 306  Q
    ||||| |||| |||||||| ||||||| ||||||||||||||||  |||||| |||||||    
T  42265474 cttttttaaagaataatttttttattaagaatccttaaagagtgctcttaggacactcgt 42265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 147 - 314
Target Start/End: Complemental strand, 40872376 - 40872211
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    |||||||||||||  | |||||| ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |    
T  40872376 aaatgttaacaag--cccttagggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaattggagtttttaa 40872279  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    | ||| |||| ||||||||||||||||  | | ||||||||||  |||||||||||||||||||||||    
T  40872278 cctttttaaagaataatttctttattagaatttcttaaagagtacccttagggcactcgttaacaaga 40872211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 147 - 315
Target Start/End: Original strand, 13978601 - 13978768
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    ||||||||||||||||  |||| |||||||||| | | ||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||| |    
T  13978601 aaatgttaacaagtgcatttagaacattgtttaataattttaaatagtaagtttt-gtcaaagtttatgaaatcaatgcattggaaattgaagtttttaa 13978699  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||| ||| ||||||||||||||||   |||||||||| |||| | ||||| ||||||||||||||||    
T  13978700 cttttttaagaaataatttctttattggaaatccttaaaaagtgcctttaggacactcgttaacaagac 13978768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 314
Target Start/End: Complemental strand, 39047069 - 39046907
Alignment:
Q  151 gttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttt 250  Q
    |||||||||||  ||||  | ||| |||||| ||||||||||||   ||||| |||||||||||||||||||||||||| |||||  ||||||| || ||    
T  39047069 gttaacaagtgtccttaaaatattatttagtaactttaaatagttaatttttctcaaagtttatgaaatcaatgcattgaaaattaaagtttttaacgtt 39046970  T
Q  251 tctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    | |||| |||||||| ||||||| |||||||||||||||||| |||||  ||||||||||||||    
T  39046969 tttaaagaataattt-tttattaagaatccttaaagagtgtcattaggatactcgttaacaaga 39046907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 284
Target Start/End: Complemental strand, 40459076 - 40458940
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    ||||||||||||| |   ||||| | ||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  40459076 aaatgttaacaagcgtctttagggctttgtttaataactttaaagagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttaa 40458977  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaa 284  Q
    ||||| |||| |||||||| ||||| | |||| |||||    
T  40458976 ctttt-taaagaataatttttttatcaagaattcttaa 40458940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 41520790 - 41520657
Alignment:
Q  160 tgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaa 259  Q
    |||||||||  ||||||||| | ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||| |||||| |||| ||    
T  41520790 tgctcttagagcattgtttaataactttaaatagtaagtttttatcaaagtttataaaatcaatgcattggaaattggagtttttaacttttttaaagaa 41520691  T
Q  260 taatt---tctttattatgaatccttaaagagtg 290  Q
    | |||   | ||||||  ||||||||||||||||    
T  41520690 tgatttactatttatttagaatccttaaagagtg 41520657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 8415783 - 8415663
Alignment:
Q  192 agtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgt 291  Q
    |||| |||||||||||||||||||||||||||| ||||||||||  ||||||| || ||| |||| ||||||| |||||||| |||||||| |||||||     
T  8415783 agtaagtttttgtcaaagtttatgaaatcaatgtattggaaattgaagtttttaacctttttaaagaataattcctttattaggaatccttcaagagtgc 8415684  T
Q  292 ccttagggcactcgttaacaa 312  Q
     || ||| || ||||||||||    
T  8415683 tctaaggacattcgttaacaa 8415663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 4377947 - 4378083
Alignment:
Q  171 cattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttcttta 270  Q
    ||||||||||| || ||||| ||| ||||||||| |||||||||| ||  ||| |||||||||||  ||||||| | |||| ||| ||||||||||||||    
T  4377947 cattgtttagtaaccttaaa-agtttgtttttgttaaagtttatgtaactaatacattggaaattaaagtttttaatttttttaagaaataatttcttta 4378045  T
Q  271 ttatgaatccttaaagagtgtccttagggcactcgtta 308  Q
    | ||| ||  ||||||||||| ||||||| ||||||||    
T  4378046 tcatgtattattaaagagtgttcttagggtactcgtta 4378083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 2112572 - 2112515
Alignment:
Q  257 aaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||    
T  2112572 aaataatttctttatgatgaatgcttaaagagtgtcc-gagggcactcgttaacaagac 2112515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 15699964 - 15700056
Alignment:
Q  222 atgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||  | | |||||||||| ||  |||||||||| | |||| ||||| |||||||||| |||||||||||||| || ||||||    
T  15699964 atgcattggaaattgaactatttgactttt-tagtaaataatttcctaattaagaatctttaaagagtgcccttagggcactcgatagcaagac 15700056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 10051798 - 10051700
Alignment:
Q  217 aatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttaggg-cactcgttaacaagac 315  Q
    ||||||||||| |||||| | | | |||||||||| || ||||| |||||||  ||   ||||||||||||||| |||||||| ||||||||||||||||    
T  10051798 aatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttcttttaaaatccttaaagagtg-ccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 248540 - 248598
Alignment:
Q  257 aaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||| |||  ||| |||||||||||| ||||| | ||||||||||||||||    
T  248540 aaataatttcttaattgagaaaccttaaagagtgcccttaagacactcgttaacaagac 248598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 8247135 - 8247037
Alignment:
Q  217 aatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||| ||||||   | | |||||||||| || ||||| |||||||  ||  ||||||||||||||||||    |||||||||||||||||||    
T  8247135 aatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatccttaaagagtgtcacgggggcactcgttaacaagac 8247037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 17437048 - 17436991
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||  ||||  |||||||||||||| ||||||||| ||||| ||||    
T  17437048 aataatttctttatttagaatttttaaagagtgtcctaagggcactcattaaccagac 17436991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 19113708 - 19113765
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||| |||||| |||  ||||||||||||| || ||||||||||||||||| ||||||    
T  19113708 aatattttcttaatttcgaatccttaaagaatgcccttagggcactcgttagcaagac 19113765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 13129219 - 13129167
Alignment:
Q  263 tttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||| |||| ||||||||||||| |||| |||||||| |||||| ||||||    
T  13129219 tttcttaattaggaatccttaaagaatgtctttagggcattcgttagcaagac 13129167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 43492094 - 43492265
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||    
T  43492094 gggaaatgttaacaagtgc-cttagggcattgcttagtaactttaaatagtaaatttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttt 43492192  T
Q  244 tgac-ttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43492193 tgactttttttaaaaaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaagac 43492265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 45925634 - 45925462
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||| |||| |||||  |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  45925634 gggaaatgttaacgagtgttcttaaaacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgtattggaaatttgaatttt 45925535  T
Q  244 tgacttttctaaaaaataa-tttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  45925534 tgacttttttaaagaataattttctttattaagaatccttaaagagtgtccttaggacactcgttaacaagac 45925462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 25670736 - 25670907
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  25670736 gggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgaaaattggagtttt 25670835  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||| |||| ||||||||||||||||  ||||||||||  |||  |||||||||||||||||||||||    
T  25670836 tgacttttttaaagaataatttctttattagaaatccttaaaaggtgctcttagggcactcgttaacaagac 25670907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 144 - 312
Target Start/End: Original strand, 698791 - 698959
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  698791 gggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaatttgagtttt 698890  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    | |||||| |||  ||||||||||||||||  |||||||||| ||| |  |||||||||||||||||||    
T  698891 taacttttttaatgaataatttctttattaaaaatccttaaaaagtattattagggcactcgttaacaa 698959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 3483180 - 3483010
Alignment:
Q  145 ggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagttttt 244  Q
    |||||||||||||||| | |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  3483180 ggaaatgttaacaagtacccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcgatgcattgaaaattggagttttt 3483081  T
Q  245 gacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||| |||| ||||||||||||||||  ||||||||||||| | ||||| | |||||||||| |||||    
T  3483080 gacttttttaaagaataatttctttattagaaatccttaaagagcgcccttatgacactcgttaataagac 3483010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 49003789 - 49003618
Alignment:
Q  145 ggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagttttt 244  Q
    |||||||||||||||||| |||| | ||||||||| | |||||||||||||  |||||||||||||||||||||| ||| ||||||||||| ||||||||    
T  49003789 ggaaatgttaacaagtgcccttatggcattgtttaataactttaaatagtaaatttttgtcaaagtttatgaaat-aatacattggaaattagagttttt 49003691  T
Q  245 gacttttctaaaaaa--taatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||  ||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49003690 gactttttaaaaaaaaataatttttttattatgaatccttaaatagtgtccttagggcactcgttaacaagac 49003618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 31822526 - 31822358
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    |||||||||||||| | |||| ||||||||||||| |||||| |||||| | |||||||||||||||| |||||||||||||  ||||| |||||||| |    
T  31822526 aaatgttaacaagtacccttacgacattgtttagtaactttagatagtaagcttttgtcaaagtttataaaatcaatgcattaaaaattggagtttttaa 31822427  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||| ||||||||||||| |||||| ||||||  |||||| |||||||||| ||||||||||| ||||    
T  31822426 cttttttaaaaaataatttttttattttgaatctataaagaatgtccttaggacactcgttaacgagac 31822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 44958272 - 44958416
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||||||||  ||||||| |||||||||||||||||||||||| ||||| |||||||    
T  44958272 gggaaatgttaacaagtggtcttaggatattgtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatgcattgaaaattggagtttt 44958371  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
    |||||||| |||| |||||||| |||||||  ||| |||||||||||    
T  44958372 tgactttt-taaagaataattt-tttattagtaattcttaaagagtg 44958416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 28188762 - 28188595
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||| |||||||||| | ||||| ||||||||| | ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||  ||||||    
T  28188762 gggaaatattaacaagtgtttttagggcattgtttaataactttaaatagtaagtttttgttaaa-tttatgaaatcaatgcattggaaattgaagtttt 28188664  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||| |||| |||| ||   ||| ||||||| ||||| |||||||||||| ||| |||||||||||||||    
T  28188663 tgatttttttaaagaaatttttttttattaggaatcattaaagagtgtctttatggcactcgttaacaa 28188595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 30494158 - 30494034
Alignment:
Q  185 tttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaa 284  Q
    ||||||||||| |||||||| |||| |||||||||||||| ||||||||||  ||||||| |||||| |||| |||||| |||||||||  |||| ||||    
T  30494158 tttaaatagtaagtttttgttaaagattatgaaatcaatgtattggaaattaaagttttttacttttttaaagaataatctctttattaaaaatctttaa 30494059  T
Q  285 agagtgtccttagggcactcgttaa 309  Q
    |||||||| |||| ||||| |||||    
T  30494058 agagtgtctttagagcacttgttaa 30494034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 5224848 - 5224973
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    |||| |||||||| ||  ||||||  |||||||| | | ||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||     
T  5224848 gaaacgttaacaaatgtccttagggtattgtttaataattttaaatagtaagtttttgttaaagtttataaaatcaatgcattgcaaatttgagttttta 5224947  T
Q  246 acttttctaaaaaataatttctttat 271  Q
    |||||| |||| ||| |||| |||||    
T  5224948 acttttttaaagaatgatttttttat 5224973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 5225156 - 5225208
Alignment:
Q  262 atttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  5225156 atttctttattatgaatccttaaatagtgcccttaggacactcgttaacaaga 5225208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 11411046 - 11411100
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||||||||| || |  ||||||||||||||||||||||| |||||||||||||    
T  11411046 aataatttcttaatgagaaatccttaaagagtgtccttaggacactcgttaacaa 11411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 34861247 - 34861348
Alignment:
Q  214 tgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaag 313  Q
    |||||||| || ||||||||||  | | |||||| ||| |||||||||||| ||| |||  |||| ||||||||||| ||   |||||||||||||||||    
T  34861247 tgaaatcagtgtattggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgcccccggggcactcgttaacaag 34861346  T
Q  314 ac 315  Q
    ||    
T  34861347 ac 34861348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 5799625 - 5799718
Alignment:
Q  221 aatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||| ||||||  ||| |||||||||| || ||||||||||| | ||||||||| |||||| | |||| | |||| |||||||| ||||||    
T  5799625 aatgcattagaaattgaagtgtttgactttt-tagaaaataatttcctaattatgaatacttaaaaaatgtcttgagggtactcgttagcaagac 5799718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 34445737 - 34445639
Alignment:
Q  217 aatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||||||   | | |||||||||| || ||| |||||||||  ||  ||||||||||||||||  |   |||||||||||||||||||    
T  34445737 aatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcgttaacaagac 34445639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 11109517 - 11109460
Alignment:
Q  257 aaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    ||||||||||||||||   ||||||||||||||||| | |||| |||||||| |||||    
T  11109517 aaataatttctttatttgaaatccttaaagagtgtcataagggaactcgttagcaaga 11109460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 14758661 - 14758694
Alignment:
Q  278 tccttaaagagtgtccttagggcactcgttaaca 311  Q
    |||||||||||||||||||| |||||||||||||    
T  14758661 tccttaaagagtgtccttagagcactcgttaaca 14758694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 19547128 - 19547185
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||  ||  ||||||||||||| || ||||||||||||||||| ||||||    
T  19547128 aataatttcttacttgggaatccttaaagaatgcccttagggcactcgttagcaagac 19547185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 35259120 - 35259181
Alignment:
Q  253 taaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    |||||||||||||||| |||  | || ||||||||||| ||  |||||||||||||||||||    
T  35259120 taaaaaataatttcttaatttagcatacttaaagagtgccccgagggcactcgttaacaaga 35259181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 35508454 - 35508361
Alignment:
Q  221 aatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    |||||||||||||||  ||| ||  | ||||  ||| ||||||||||| |||  ||| || ||||||||||| | |||||||||||||||||||    
T  35508454 aatgcattggaaattgaagtgttaaattttttcaaagaataatttcttaattgagaaaccataaagagtgtcatcagggcactcgttaacaaga 35508361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 40377085 - 40377012
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||| || ||||| |||||||  ||  |||||||||||||||| ||   |||||||||||||||||||    
T  40377085 tttgacttttttataaaattatttcttcttttggaatccttaaagagtgcccaaggggcactcgttaacaagac 40377012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 29523601 - 29523661
Alignment:
Q  223 tgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatcctta 283  Q
    |||||||||||||  |||||||  ||||| |||||||| |||||||||||| |||| ||||    
T  29523601 tgcattggaaattgaagtttttaccttttttaaaaaattatttctttattaggaatgctta 29523661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 46803558 - 46803510
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
    |||||||||| ||||||||| |||||  |||| ||||||||||||||||    
T  46803558 tttgacttttataaaaaatactttctaaattaggaatccttaaagagtg 46803510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 18375184 - 18375032
Alignment:
Q  163 tcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataa 262  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||    
T  18375184 tcttaggacattgtttagtgactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattgaaaattggagtttttgacttttttaaagaataa 18375085  T
Q  263 tttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||| |||||||||||||||  |||||||  |||||||||||||||    
T  18375084 tttctttattaggaatccttaaagagtacccttaggatactcgttaacaagac 18375032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 146 - 290
Target Start/End: Original strand, 27501702 - 27501846
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    ||||||||||||| ||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  27501702 gaaatgttaacaaatgcccttaagacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaattaatgcattggaaattgaagtttttg 27501801  T
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
    ||||||  ||||||||||||||||||||  ||| |||||||||||    
T  27501802 actttttaaaaaaataatttctttattaaaaattcttaaagagtg 27501846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 32493101 - 32493208
Alignment:
Q  207 aagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgt 306  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||| ||||||| |||||||||||||||||||||| | || ||||    
T  32493101 aagtttatgaaatcaatgcaatggaaattggagtttttgacttttttgaagaataattt-tttattaagaatccttaaagagtgtccttatgacagtcgt 32493199  T
Q  307 taacaagac 315  Q
    |||||||||    
T  32493200 taacaagac 32493208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 44330642 - 44330744
Alignment:
Q  192 agtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttc---tttattatgaatccttaaagag 288  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||   |||||||  |||||||||||||    
T  44330642 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttgacttttttaaataataatttcttttttattaataatccttaaagag 44330741  T
Q  289 tgt 291  Q
    |||    
T  44330742 tgt 44330744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 314
Target Start/End: Complemental strand, 64017 - 63856
Alignment:
Q  149 atgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgact 248  Q
    ||||||||||||| |||||| |||||||||||| |||||   ||||| |||||||||||| |||||||||| |||| |||  |||||  | |||||||||    
T  64017 atgttaacaagtgttcttag-acattgtttagtaacttt---tagtaagtttttgtcaaaatttatgaaattaatgtattaaaaattaaaatttttgact 63922  T
Q  249 tttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    ||| |||| ||||||||||||||||  | |  ||||| | || ||||||| |||||||||||||||    
T  63921 tttttaaagaataatttctttattaaaattttttaaaaaatgcccttaggacactcgttaacaaga 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 44365416 - 44365498
Alignment:
Q  192 agtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattat 274  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  44365416 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttgacttttttaaataataatttcttttttat 44365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 43745652 - 43745594
Alignment:
Q  257 aaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||    
T  43745652 aaataatttctttatttggaatccttaaagagtgccctaagggcactcgttaacaagac 43745594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 12133556 - 12133502
Alignment:
Q  261 aatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||| ||  |||||||||||||||||||| |||||||| |||||||||||    
T  12133556 aatttctttttttggaatccttaaagagtgtcctaagggcacttgttaacaagac 12133502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 9153514 - 9153581
Alignment:
Q  219 tcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaag 286  Q
    |||||||||||||||||  ||| |||| ||||| |||| ||||||||||| |||  ||||||||||||    
T  9153514 tcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaaag 9153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 28572658 - 28572709
Alignment:
Q  263 tttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    |||||| |||| |||||||||||||||| ||||||  |||||||||||||||    
T  28572658 tttcttaattaggaatccttaaagagtgaccttagaacactcgttaacaaga 28572709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 15120131 - 15120181
Alignment:
Q  263 tttctttattatgaatccttaaagagtgtccttagggcactcgttaacaag 313  Q
    |||||| |||| |||||||||||||||| ||| ||||||||||||| ||||    
T  15120131 tttcttaattaggaatccttaaagagtgccctaagggcactcgttagcaag 15120181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 433606 - 433643
Alignment:
Q  275 gaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  433606 gaatccttaaagagtgtcctcggggcactcgttaacaa 433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 44769133 - 44769182
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtgt 291  Q
    |||||||||| ||||  ||||||| ||||||| |||||||||||||||||    
T  44769133 tttgacttttttaaagcataatttttttattaagaatccttaaagagtgt 44769182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 20683093 - 20683133
Alignment:
Q  275 gaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||||||   |||||||||||||||||||    
T  20683093 gaatccttaaagagtgtcccgggggcactcgttaacaagac 20683133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 32493059 - 32493099
Alignment:
Q  151 gttaacaagtgctcttaggacattgtttagtgactttaaat 191  Q
    ||||||||||||||||||| ||||||||||| | |||||||    
T  32493059 gttaacaagtgctcttagggcattgtttagtaattttaaat 32493099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 44941177 - 44941216
Alignment:
Q  275 gaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  44941177 gaatccttaaagagtgtc-tcagggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 33650149 - 33649978
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||    
T  33650149 gggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaaatgtatgaaatcaatgcattggaaattagagtttt 33650050  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
     ||||||| | || ||||||||||||||||  ||| |||||||||||||||||||||||||||| |||||||    
T  33650049 agactttttttaagaataatttctttattagaaattcttaaagagtgtccttagggcactcgttgacaagac 33649978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 44254095 - 44254263
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    ||||||||||||||||| |||| |||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  44254095 gaaatgttaacaagtgcccttaagacatt-tttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattggaaattgaagtttttg 44254193  T
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||| |||  || |||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||    
T  44254194 acttttttaaggaagaatttctttattagaaatccttaaagagtgcccttaggacactcgttaacaagac 44254263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 34336470 - 34336608
Alignment:
Q  176 tttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatg 275  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||| |    
T  34336470 tttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaag 34336569  T
Q  276 aatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||| | | |||||| |||||||||||||    
T  34336570 aatccttaaagagtg-cataagggcaatcgttaacaagac 34336608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 15271120 - 15271030
Alignment:
Q  183 actttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttatta 273  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  15271120 actttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattggaaattcgagtttttgacttttttaaagaataatttctttatta 15271030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 312
Target Start/End: Original strand, 38236225 - 38236382
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    |||| ||||||||| | |||||  ||||||||| | |||||||||||||   |||||||||| |||||||||||||||||||| ||        ||||||    
T  38236225 aaatattaacaagttcccttagagcattgtttaataactttaaatagtaaaattttgtcaaaatttatgaaatcaatgcattgaaa--------ttttga 38236316  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||| ||||||  |||||||||||||    
T  38236317 cttttttaaaaaataatttctttattaagaatccgtaaagagtgcccttagaacactcgttaacaa 38236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 42704420 - 42704317
Alignment:
Q  170 acattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttcttt 269  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||| |||  | ||||||||||    
T  42704420 acattgtttactaactttaaatagtaagtttttgtcaaaatttatgaaattaatgcattggagattggagtttttgacttttttaatgagtaatttcttt 42704321  T
Q  270 atta 273  Q
    ||||    
T  42704320 atta 42704317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 312
Target Start/End: Complemental strand, 44042675 - 44042510
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    |||||||||||||||| | | |||| ||| ||||  || ||||||||||| |||||| |  || ||| || | |||||||||||||||||  ||| ||      
T  44042675 gaaatgttaacaagtgtt-taaggatattttttaaagattttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattga 44042577  T
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||||  ||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44042576 actttttcaatgaatagtttcttaattatgaatccttaaagagtgtccttagggcactcgttaacaa 44042510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 9774849 - 9774726
Alignment:
Q  183 actttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaa-aataatttctttattatgaatcct 281  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||| |||||  ||||||||| |||| ||||| |||||||| |||||   |||||||    
T  9774849 actttaaatagtaaatttttgtcaaagcttatgaaatcaatgcattgaaaattatagtttttgatttttataaaagaataatttttttatatagaatcct 9774750  T
Q  282 taaagagtgtccttagggcactcg 305  Q
    |||| |||||  ||||| ||||||    
T  9774749 taaaaagtgtttttaggacactcg 9774726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 43429767 - 43429669
Alignment:
Q  207 aagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcg 305  Q
    |||||||||  ||||||| |||| |||||  |||||||||||||| ||| |||||||||||| |||| ||||| |||||||||||| ||| ||||||||    
T  43429767 aagtttatgttatcaatggattgaaaattgaagtttttgacttttttaagaaataatttcttcattaagaatctttaaagagtgtctttatggcactcg 43429669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 4166522 - 4166468
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||||||||| ||||||||||||||||||||| |||||||  ||||||||||||    
T  4166522 aataatttcttgattatgaatccttaaagagtgcccttaggaaactcgttaacaa 4166468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 20142514 - 20142575
Alignment:
Q  254 aaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||| |||   |  |||||||||||||||||||| ||||||||||||||||    
T  20142514 aaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagac 20142575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 37231417 - 37231474
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||   |||| |||||||||| ||| ||||||||||||||||||||    
T  37231417 aataatttctttatttgaaatctttaaagagtgccctaagggcactcgttaacaagac 37231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 6904190 - 6904151
Alignment:
Q  276 aatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  6904190 aatccttaaagagtgcccttagggcactcgttagcaagac 6904151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  186 ttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaa 285  Q
    ||||||||||  ||||| | ||| ||| || | ||||||||||| |||||  | | |||||||||| |||| |||||||| || ||   |||| ||||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  286 gagtgtccttagggcactcgttaacaa 312  Q
    |||||||   |||||||||||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 1876485 - 1876617
Alignment:
Q  182 gactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatcct 281  Q
    |||||||||| |||  ||||| | ||||||| || ||||| |||||||||||||  |  ||||||| |||  ||| ||||||| ||| |||  | || ||    
T  1876485 gactttaaatggtaattttttatgaaagtttgtgtaatcagtgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatgct 1876584  T
Q  282 taaagagtgtccttagggcactcgttaacaaga 314  Q
    ||||||||| ||   ||||||||||||||||||    
T  1876585 taaagagtgccccgggggcactcgttaacaaga 1876617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 28460036 - 28460128
Alignment:
Q  223 tgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||  ||| ||| | | || ||||||||||||| ||||||| |||| ||||||||||| ||   |  ||||||||||||||||    
T  28460036 tgcattggaaattgaagtctttaattattttaaaaaataatttttttattaggaatgcttaaagagtgccccgggatcactcgttaacaagac 28460128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 146 - 315
Target Start/End: Complemental strand, 24797552 - 24797383
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  24797552 gaaatattaacaagtgcccttaggacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatacattggaaattagagtttttg 24797453  T
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||| |||| |||||||||||||||| ||||| |||||||||| |||||| ||   ||||||||||||    
T  24797452 acttttttaaagaataatttctttattaggaatcattaaagagtgcccttagagctaacgttaacaagac 24797383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 29408145 - 29407973
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtga-ctttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagttt 242  Q
    ||||||||||||||||||| ||| |   ||||||||| || |||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||    
T  29408145 gggaaatgttaacaagtgcccttggagtattgtttagggaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattagaaattggagttt 29408046  T
Q  243 ttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  29408045 ttgacttttttaaagaataatttctttattaggaatccttaaagagtgcccttaaggcactcgttaacaagac 29407973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 9975038 - 9975148
Alignment:
Q  165 ttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatt 264  Q
    ||||| ||||||||||| |||||||||||||  ||||||| ||||||||||||||||||  ||| ||||||||||||||| | |||| |||| |||||||    
T  9975038 ttagggcattgtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatatattagaaatttgagttttttatttttttaaagaataatt 9975137  T
Q  265 tctttattatg 275  Q
    |||||| ||||    
T  9975138 tctttactatg 9975148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 22020534 - 22020636
Alignment:
Q  192 agtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttc---tttattatgaatccttaaagag 288  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||   |||||||  |||||||||||||    
T  22020534 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttgacttttttaaataataatttcttttttattaataatccttaaagag 22020633  T
Q  289 tgt 291  Q
    |||    
T  22020634 tgt 22020636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 22055031 - 22055113
Alignment:
Q  192 agtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattat 274  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  22055031 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttgacttttttaaataataatttcttttttat 22055113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 10345961 - 10346093
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    |||||| |||||||||  |||||| ||||||||||| |  |||| |||||  ||||||| | | |||||| ||||||||||||| |||||  |||||||     
T  10345961 gaaatgctaacaagtgtccttagggcattgtttagtaatcttaattagtaaatttttgttagaatttatgtaatcaatgcattgaaaattgaagttttta 10346060  T
Q  246 acttttctaaaaaataatttctttattatgaat 278  Q
    |||||| |||||||||||||  |||||| ||||    
T  10346061 acttttttaaaaaataattttgttattaggaat 10346093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 147 - 315
Target Start/End: Original strand, 5248601 - 5248769
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    |||| ||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  5248601 aaatattaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttaa 5248700  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    | ||| |||| |||||||||||||||| |||||||||||||||| ||||| ||  ||||||||||||||    
T  5248701 catttttaaagaataatttctttattaggaatccttaaagagtgcccttaaggggctcgttaacaagac 5248769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 17883279 - 17883449
Alignment:
Q  146 gaaatgttaacaagtgctcttaggaca-ttgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagttttt 244  Q
    |||||||||| |||||  |||| |||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||  |||||||    
T  17883279 gaaatgttaagaagtgtccttaagacaattgtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcgttggaaattaaagttttt 17883378  T
Q  245 gacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||| ||||||| ||||||||||| ||||    
T  17883379 gacttttttaaaaaataatttctttattaaaaatccttaaagagtgcccttaggacactcgttaactagac 17883449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 152 - 312
Target Start/End: Original strand, 47405203 - 47405363
Alignment:
Q  152 ttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgactttt 251  Q
    ||||||||||  || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||| |||    
T  47405203 ttaacaagtggcctcaggacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattagaaattgaagtttttgaccttt 47405302  T
Q  252 ctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
     |||  |||||||| ||||||| |||||||||||||||| ||| | |||||||||||||||    
T  47405303 ttaatgaataatttatttattaggaatccttaaagagtgccctcaaggcactcgttaacaa 47405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 26803984 - 26804128
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||||||| |||||| ||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||    
T  26803984 gggaaatgttaacaagtgcccttagggcattgtttaataactttaaatagtaagtttttgtcaaagtttataaaatcaatgcattggaaattgaagtttt 26804083  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
    |||||||| |||| |||||||  ||| ||| ||||| ||||||||||    
T  26804084 tgacttttttaaagaataatt--ttttttaagaatctttaaagagtg 26804128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 297
Target Start/End: Original strand, 26402759 - 26402900
Alignment:
Q  156 caagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaa 255  Q
    ||||||| |||| | ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||| |||||  |||||||||||||| |||    
T  26402759 caagtgcccttaaggcattgtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagtttttgacttttttaa 26402858  T
Q  256 aaaataatttctttattatgaatccttaaagagtgtccttag 297  Q
      |||||||||||||||| |||||||||||||||| ||||||    
T  26402859 ggaataatttctttattaggaatccttaaagagtgcccttag 26402900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 147 - 315
Target Start/End: Original strand, 41514259 - 41514418
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||| |||||  | ||||       
T  41514259 aaatgttaacaagtgcttttaggacattgtttagtaactttaaatagtaagttttagtcaaagtttatgaaatcaatgtattgaaaattaaaatttt--- 41514355  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
          |||| ||||||||||||||||  |||| |||| ||||||||||| | |||| |||||||||||    
T  41514356 ------taaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagac 41514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 6387974 - 6388089
Alignment:
Q  200 tttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttaggg 299  Q
    ||||| ||| ||||| |||| |||| ||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | | ||    
T  6387974 tttgttaaaatttataaaattaatgtattggaaattgaagtttttgacttttttaaagaataatttctttattatgaatccttaaagagtgtcttaaagg 6388073  T
Q  300 cactcgttaacaagac 315  Q
    |||| |||||||||||    
T  6388074 cacttgttaacaagac 6388089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 33899740 - 33899872
Alignment:
Q  183 actttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatcctt 282  Q
    |||||||||| || |||||||| ||| |||||||||||||| ||||| |||||  | ||| ||| |||| |||  |||||||||||||||| ||||| ||    
T  33899740 actttaaatattaagtttttgttaaaatttatgaaatcaatacattgaaaattgaaatttgtgatttttttaaggaataatttctttattaggaatcttt 33899839  T
Q  283 aaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||| |||||   ||||||||||||||||    
T  33899840 aaagagtgcccttactacactcgttaacaagac 33899872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 15034862 - 15034934
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||| || |||||| |||||||  |  |||||||||||||||||||| ||||||||||||||||||||    
T  15034862 tttgactttt-tataaaatattttcttttcttggaatccttaaagagtgtcctaagggcactcgttaacaagac 15034934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 17302918 - 17302861
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||| |||| |||||||||||| |   |||||||||||||||||||    
T  17302918 aataatttctttattaggaatgcttaaagagtgtaccgggggcactcgttaacaagac 17302861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 27076210 - 27076267
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||  ||||||||||||||||  || ||| ||||||||||||||||    
T  27076210 aataatttctttatttagaatccttaaagagtgctctaaggacactcgttaacaagac 27076267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 27202091 - 27202034
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||  ||||||||||||||||  || ||| ||||||||||||||||    
T  27202091 aataatttctttatttagaatccttaaagagtgctctaaggacactcgttaacaagac 27202034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 39960413 - 39960458
Alignment:
Q  211 ttatgaaatcaatgcattggaaatttgagtttttgacttttctaaa 256  Q
    ||||||||||||||||||||||||| |||||||| |||||| ||||    
T  39960413 ttatgaaatcaatgcattggaaattggagtttttaacttttttaaa 39960458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 44319930 - 44319991
Alignment:
Q  254 aaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||| |||   |  |||||||||||||||||||| ||||||||||||||||    
T  44319930 aaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagac 44319991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 21513051 - 21512995
Alignment:
Q  257 aaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||| ||||||||||||||||| ||||||||||||||   || ||||||||||||||||    
T  21513051 aaattatttctttattatgaatgcttaaagagtgtcc--gggacactcgttaacaagac 21512995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 5907855 - 5907795
Alignment:
Q  254 aaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||| ||| |||  |||| ||||||||||| ||| ||||||||||||||||||||    
T  5907855 aaaaaataattacttaatttagaatgcttaaagagtgccct-agggcactcgttaacaagac 5907795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 44452043 - 44452176
Alignment:
Q  181 tgactttaaatagtatgtttttgtcaaagtttatgaaatcaa-tgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatc 279  Q
    |||||||||||||||  ||||| | ||||||| || ||| || |||||||||||||  |  ||||||  ||| |||| ||||||| ||| |||  ||||     
T  44452043 tgactttaaatagtaattttttatgaaagtttgtgtaataaagtgcattggaaattgaaacttttgatatttttaaataataattacttaatttagaatg 44452142  T
Q  280 cttaaagagtgtccttagggcactcgttaacaagac 315  Q
     ||||||||||||  | |||||||||||||||||||    
T  44452143 tttaaagagtgtc--tggggcactcgttaacaagac 44452176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 46521642 - 46521474
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||  ||||| |||||||| |    
T  46521642 aaatgttaacaagtgcttttaagacattgtttagtgactttaaataataaatttttgttaaagtttatgaaatcaatgcattaaaaattggagtttttaa 46521543  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||| |||| |||||||| ||||||| ||||||||||||||||  || ||||||||||||||||||||    
T  46521542 cttttttaaagaataatttatttattaggaatccttaaagagtgctctaagggcactcgttaacaagac 46521474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 146 - 312
Target Start/End: Complemental strand, 5047343 - 5047177
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    |||||||||||||||| |||||||  |||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||||  | ||||||    
T  5047343 gaaatgttaacaagtgttcttagggtattgtttagtaactttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaattgaaatttttg 5047244  T
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    |||||| |||  ||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||    
T  5047243 acttttgtaatgaataatttctttattagaaatccttaatgagtgcccttagggcactcgttaacaa 5047177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 145 - 290
Target Start/End: Original strand, 21988428 - 21988574
Alignment:
Q  145 ggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattgg-aaatttgagtttt 243  Q
    ||||||||||| ||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  21988428 ggaaatgttaataagtgttcttaggacattgtttaataactttaaatagtaagtttttgtcaaagtttatgaaatcaatacattggaaaattggagtttt 21988527  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||    
T  21988528 tgacttttttaaagaataatttctttattatgaatctttaaagagtg 21988574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 28695868 - 28695736
Alignment:
Q  183 actttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatcctt 282  Q
    |||||||||||||  |||||||||||||||||||||| ||| |||||||||||  |||||||||||||| |||||||||||||||||||||  |||||||    
T  28695868 actttaaatagtaaatttttgtcaaagtttatgaaattaatacattggaaattgaagtttttgacttttttaaaaaataatttctttattagtaatcctt 28695769  T
Q  283 aaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||| ||||||||||||||||||||||||    
T  28695768 aaagagtgcccttagggcactcgttaacaagac 28695736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 54495601 - 54495449
Alignment:
Q  165 ttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatt 264  Q
    ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||    
T  54495601 ttagggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattgaaaattggagtttttaacttttttaaaaaataatt 54495502  T
Q  265 tctttatt--atgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||  |  |||| ||||||| |  |||||| |||||||||||||||||    
T  54495501 tctttattaaaaaaatctttaaagaatagccttagagcactcgttaacaagac 54495449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 199 - 315
Target Start/End: Complemental strand, 49360130 - 49360014
Alignment:
Q  199 ttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagg 298  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||| |||||| ||||| ||||||    
T  49360130 ttttgtcaaagtgtatgaaatcaatgcattggaaattggagtttttgacttttttaaagaatattttctttactatgaattcttaaaaagtgttcttagg 49360031  T
Q  299 gcactcgttaacaagac 315  Q
    |||||||||||||||||    
T  49360030 gcactcgttaacaagac 49360014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 46088520 - 46088633
Alignment:
Q  183 actttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatcctt 282  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||| |||  |||||||||||||||| |||| |||    
T  46088520 actttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgatttttttaaggaataatttctttattaggaattctt 46088619  T
Q  283 aaagagtgtcctta 296  Q
    ||||||||||||||    
T  46088620 aaagagtgtcctta 46088633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 20787514 - 20787367
Alignment:
Q  164 cttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataat 263  Q
    |||| ||||||||||||||| ||||||| |||   |||||||||||||||||||||||||| |||| |||||  |||||||||||||| |||||||||||    
T  20787514 cttatgacattgtttagtgattttaaatggtaaaattttgtcaaagtttatgaaatcaatgtattgaaaattgaagtttttgactttt-taaaaaataat 20787416  T
Q  264 ttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    || |||||||  ||||||||||||||| | ||||| |||||||||||||    
T  20787415 ttttttattaaaaatccttaaagagtgcctttaggacactcgttaacaa 20787367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 315
Target Start/End: Original strand, 20180217 - 20180359
Alignment:
Q  173 ttgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttatt 272  Q
    ||||||||  |||||||||||||  |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||| |||||||| ||||||    
T  20180217 ttgtttaggaactttaaatagtaaatttttgtcaaagtttatgaaattaatgcattgaaaattggagtttttgacttttttaaataataatttatttatt 20180316  T
Q  273 atgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    | |||| |||||||||||  | |||| || |||||||||||||    
T  20180317 aagaattcttaaagagtgatcataggacattcgttaacaagac 20180359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 30161314 - 30161435
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    ||||||||||||||| |||| ||||| ||||||||  | ||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  30161314 gggaaatgttaacaaatgctattagggcattgttt--taactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgtaaattggagtttt 30161411  T
Q  244 tgacttttctaaaaaataatttct 267  Q
    |||||||| |||| ||||||||||    
T  30161412 tgacttttttaaagaataatttct 30161435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 20176583 - 20176697
Alignment:
Q  198 tttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttag 297  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||||||||| |||| |||  ||||||||||||||||||||||||||| ||||| ||||||    
T  20176583 tttttctcaaagttcatgaaatcaatgcattgaaaattggagtttttgaattttttaaggaataatttctttattatgaatccttaaggagtgcccttag 20176682  T
Q  298 ggcactcgttaacaa 312  Q
    |||||| ||||||||    
T  20176683 ggcactggttaacaa 20176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 289
Target Start/End: Original strand, 33266784 - 33266930
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtt-tttgtcaaagtttatgaaatcaatgcattggaaatttgagttt 242  Q
    |||||||||||| |||| | ||||||| ||| |||||| ||||||||||||| ||| ||| | |||||||||||||||||| |||||||||||  |||||    
T  33266784 gggaaatgttaagaagtacccttaggatattatttagtaactttaaatagtaagttatttttaaaagtttatgaaatcaatccattggaaattaaagttt 33266883  T
Q  243 ttgacttttctaaaaaataatttctttattatgaatccttaaagagt 289  Q
    ||||||||| |||| ||||||||||||||||  |||| |||||||||    
T  33266884 ttgacttttttaaagaataatttctttattaaaaatctttaaagagt 33266930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 48079245 - 48079375
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttga 246  Q
    ||||||||||||||||| | ||| ||||||||||| |||||||||||||            |||||||||||||||||||||||||||| |||||||| |    
T  48079245 aaatgttaacaagtgctataagggcattgtttagtaactttaaatagta------------agtttatgaaatcaatgcattggaaattggagtttttaa 48079332  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
     |||| |||| |||||||||||||||||||||||||||||||||    
T  48079333 ttttt-taaagaataatttctttattatgaatccttaaagagtg 48079375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 312
Target Start/End: Complemental strand, 24754065 - 24753900
Alignment:
Q  148 aatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgag-tttttga 246  Q
    |||||||| || ||| |||||| ||||||||||  |||||||||||||  ||||| | ||||||||||||||||||||||||||||||  || ||||| |    
T  24754065 aatgttaaaaactgcccttagggcattgtttagaaactttaaatagtaaatttttatgaaagtttatgaaatcaatgcattggaaattaaagttttttta 24753966  T
Q  247 cttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||| |||  ||||||||||||||||  |||  |||||||||| | |||| ||||| ||||||||    
T  24753965 cttttttaaggaataatttctttattagaaatttttaaagagtgccattagagcacttgttaacaa 24753900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 34124537 - 34124653
Alignment:
Q  198 tttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttag 297  Q
    |||||||||||||||||||||||||||||||| |||||  | |||| ||||||| |||||||||||||||||||||  |||||||||| ||||| |||||    
T  34124537 tttttgtcaaagtttatgaaatcaatgcattgaaaattgtaatttt-gacttttttaaaaaataatttctttattagaaatccttaaaaagtgttcttag 34124635  T
Q  298 ggcactcgttaacaagac 315  Q
    | ||||| |||| |||||    
T  34124636 gacactccttaataagac 34124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 23135445 - 23135569
Alignment:
Q  191 tagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtg 290  Q
    ||||| |||||||| |||||||||||||| ||||||| ||||||||||||| || | |||| |||  |||||||| |||||||  |||||||||||||||    
T  23135445 tagtaagtttttgttaaagtttatgaaattaatgcatcggaaatttgagttatttatttttttaaggaataatttttttattagaaatccttaaagagtg 23135544  T
Q  291 tccttagggcactcgttaacaagac 315  Q
      |||||| ||||||||||||||||    
T  23135545 cacttaggacactcgttaacaagac 23135569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 25751684 - 25751807
Alignment:
Q  162 ctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaata 261  Q
    |||||| ||||||||||| | ||||||||||||| |||||| | |||| ||||| ||| ||||||||| |||||  | |||||||||||| |||| ||||    
T  25751684 ctcttaagacattgtttaataactttaaatagtaagtttttattaaagcttatgcaattaatgcattgaaaattaaattttttgacttttttaaagaata 25751783  T
Q  262 atttctttattatgaatccttaaa 285  Q
    ||||||||||||  ||||||||||    
T  25751784 atttctttattagaaatccttaaa 25751807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 5091811 - 5091926
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    |||| ||||||||||||| ||||| ||||||||||| |||||||||| ||  ||||||| ||| |||||||| ||||||||||| |||||  ||||||||    
T  5091811 gaaaagttaacaagtgct-ttagggcattgtttagtaactttaaataataaatttttgttaaattttatgaa-tcaatgcattgaaaattgaagtttttg 5091908  T
Q  246 acttttctaaaaaataat 263  Q
    |||||| |||| ||||||    
T  5091909 acttttttaaagaataat 5091926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 41690168 - 41690287
Alignment:
Q  198 tttttgtcaaagtttatgaaatcaatgcattggaaatttgagttttt-gacttttctaaaa-aataatttctttattatgaatccttaaagagtgtcctt 295  Q
    ||||| ||||||||||| |||||||||||||||||||| || ||||| || |||| | ||| |||||||||||||||| ||||||||||| ||||   ||    
T  41690168 tttttatcaaagtttataaaatcaatgcattggaaattagaattttttgattttttttaaagaataatttctttattaggaatccttaaaaagtgctttt 41690267  T
Q  296 agggcactcgttaacaagac 315  Q
    || |||||| ||||||||||    
T  41690268 agcgcactcattaacaagac 41690287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 49587845 - 49587736
Alignment:
Q  206 aaagtttatgaaatcaatgcattggaaatttgagtttttgac-ttttctaaaaaat-aatttctttattatgaatccttaaagagtgtccttagggcact 303  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||| |||| ||| ||||||||||||| |||||||| ||||||| ||| | ||||||    
T  49587845 aaagtttatgaaatcaatgcattgaaaattagagtttttgactttttttaaagaataaatttctttattaggaatcctt-aagagtgccctca-ggcact 49587748  T
Q  304 cgttaacaagac 315  Q
     |||||||||||    
T  49587747 tgttaacaagac 49587736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 10042985 - 10042885
Alignment:
Q  146 gaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttg 245  Q
    |||||||||||||||||  |||   ||||||||| | ||||||||||||| |||||| | ||| |||||||||||||||||||| | |||  ||||||||    
T  10042985 gaaatgttaacaagtgcctttaaagcattgtttaataactttaaatagtaagtttttattaaaatttatgaaatcaatgcattgaacattgaagtttttg 10042886  T
Q  246 a 246  Q
    |    
T  10042885 a 10042885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 23135379 - 23135430
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagta 195  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||    
T  23135379 gggaaatgttaacaagtgcccttagaacattgtttagtaactttaaatagta 23135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 13404194 - 13404136
Alignment:
Q  254 aaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||||||||||||||| ||||||||| |||||||| ||||||  || |||||||||||||    
T  13404194 aaaaaataatttcttcattatgaatgcttaaagaatgtcctatggacactcgttaacaa 13404136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 30161460 - 30161510
Alignment:
Q  265 tctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||  |||||||||||||| |||||||| ||||||||||||||||    
T  30161460 tctttattagaaatccttaaagagtatccttaggacactcgttaacaagac 30161510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 49532293 - 49532386
Alignment:
Q  221 aatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||||  | | ||||| |||| |||| ||||||||||| |||  |||| |||| |||||||||   |||||||||||||||||||    
T  49532293 aatgcattggaaattgaattatttga-ttttataaagaataatttcttaatttggaatgcttacagagtgtcccgggggcactcgttaacaagac 49532386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 27346341 - 27346268
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||| || ||||||| |||||| ||  |||||||||||||||| ||  || ||||||||||| |||||    
T  27346341 tttgacttttttataaaataaattctttttttagaatccttaaagagtgcccgcagagcactcgttaaaaagac 27346268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 31655542 - 31655473
Alignment:
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||| |||| |||||||| || |||  ||| ||||||| |||| ||| ||||||||||||||||||||    
T  31655542 acttttttaaagaataattttttaattgggaaaccttaaaaagtgccctaagggcactcgttaacaagac 31655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 40071335 - 40071282
Alignment:
Q  259 ataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    |||||||||| ||||  ||||||||||||||||| |||| |||||| |||||||    
T  40071335 ataatttcttaattagaaatccttaaagagtgtcattagagcactcattaacaa 40071282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 43809176 - 43809127
Alignment:
Q  259 ataatttctttattatgaatccttaaagagtgtccttagggcactcgtta 308  Q
    |||||||||| |||  |||| ||||||||||||||||||| |||||||||    
T  43809176 ataatttcttaatttagaattcttaaagagtgtccttaggacactcgtta 43809127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 49795176 - 49795115
Alignment:
Q  254 aaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||| |||||||  | || ||||||||||| ||  ||||||||||||||||||||    
T  49795176 aaaaaataattactttatttagtatgcttaaagagtgcccccagggcactcgttaacaagac 49795115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 50131087 - 50131030
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||| |||  ||| ||||||||| || ||| ||||||||||||||||||||    
T  50131087 aataatttcttaattgggaaaccttaaagaatgccctcagggcactcgttaacaagac 50131030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 144 - 309
Target Start/End: Original strand, 53641639 - 53641804
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    |||||||||||||||||   |||| || |||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  53641639 gggaaatgttaacaagtatacttaagatattgtttaataactttgaatagtaagtttttgtcaaagtttatgaaatcaatgcattagaaatttaagtttt 53641738  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaa 309  Q
    ||| |||| |||| ||||||||||||||||  |||| |||||||||||||||| ||||||||||||    
T  53641739 tgaattttttaaagaataatttctttattagaaatctttaaagagtgtccttaaggcactcgttaa 53641804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 32734822 - 32734654
Alignment:
Q  144 gggaaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttt 243  Q
    |||||||||| || ||| |  |||||||||| |||||| ||||||| ||||| |||||||||||| |||||||||  ||||||||||||||| |||||||    
T  32734822 gggaaatgttgactagtacctttaggacattatttagtaactttaagtagtaagtttttgtcaaaatttatgaaactaatgcattggaaattagagtttt 32734723  T
Q  244 tgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    |  ||||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32734722 taccttttttaaagaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaa 32734654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 53605767 - 53605624
Alignment:
Q  172 attgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttat 271  Q
    |||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||| | |||  ||||||||||||| ||||    
T  53605767 attgtttagtaactttaaatagtaagtttttatcaaagtttataaaatcaatgcattggaaattagagtttttggcatttagaaaaaataatttcattat 53605668  T
Q  272 tatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    || |||| |||||| |||| |||||||| |||||||||||||||    
T  53605667 taggaattcttaaaaagtgcccttagggtactcgttaacaagac 53605624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 11465611 - 11465761
Alignment:
Q  165 ttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatt 264  Q
    ||||| |||| |||||  ||||||||||||| ||||||||||||||||||||||||| || |||| |||||  |||||||||||||| |||| |||||||    
T  11465611 ttagggcattatttagaaactttaaatagtaagtttttgtcaaagtttatgaaatcactgtattgaaaattgaagtttttgacttttttaaagaataatt 11465710  T
Q  265 tctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    | |||||||  |||||||||||||||| |||||| ||||||||||||||||    
T  11465711 tttttattaaaaatccttaaagagtgttcttaggacactcgttaacaagac 11465761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 52299130 - 52299014
Alignment:
Q  197 gtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagt--gtcct 294  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||| |||||||||||||||  | | |    
T  52299130 gtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttgacttttttaaggaataatttctttattaggaatccttaaagagtgcgcctt 52299031  T
Q  295 tagggcactcgttaaca 311  Q
    |||||||||||||||||    
T  52299030 tagggcactcgttaaca 52299014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 4275199 - 4275340
Alignment:
Q  171 cattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttcttta 270  Q
    ||||||||| | |||||||||| || |||||||||||||||||| ||||||||| ||||||| || |||||||| |||||| |||| |||||||| ||||    
T  4275199 cattgtttaataactttaaataataagtttttgtcaaagtttataaaatcaatgtattggaagttggagtttttaacttttttaaagaataattttttta 4275298  T
Q  271 ttatgaatccttaaagagtgtccttagggcactcgttaacaa 312  Q
    ||| ||||| |||||||||| |||||| |||||||| |||||    
T  4275299 ttaagaatctttaaagagtgcccttagagcactcgtaaacaa 4275340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 52380856 - 52380961
Alignment:
Q  210 tttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaa 309  Q
    ||||||| |||||||||||||||||| |||||||||| |||| | ||||||||||||||||||| ||||| |||||||||| ||||||| |||||  |||    
T  52380856 tttatgagatcaatgcattggaaattagagtttttgattttttttaaaaataatttctttattaggaatcgttaaagagtgcccttaggacactccataa 52380955  T
Q  310 caagac 315  Q
    ||||||    
T  52380956 caagac 52380961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 23554737 - 23554802
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgtta 308  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  23554737 tttgactttt-taaaaaataatttctttattaagaatccttaaagagtgtcccgggggcactcgtta 23554802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 30364038 - 30364180
Alignment:
Q  165 ttaggacattgtttagtgactttaaatagtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatt 264  Q
    ||||| |||| |||||  ||||||||||| | |||||||| ||||||||||||||||||| | || |||||  | ||||||| |||| | ||||||| ||    
T  30364038 ttagggcattatttagcaactttaaatagcaagtttttgttaaagtttatgaaatcaatgga-tgaaaattgaaatttttga-tttttttaaaaatattt 30364135  T
Q  265 tc-tttattatgaatccttaaagagtgtccttagggcactcgtta 308  Q
    || || |||| |||||||||||||||||  |||| ||| ||||||    
T  30364136 tcattcattaagaatccttaaagagtgtttttagtgcattcgtta 30364180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 53040548 - 53040462
Alignment:
Q  206 aaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtc 292  Q
    ||||||| || | ||||| |||||||||||  ||| ||||| |||| |||| ||||||||||| |||  ||||||||||||||||||    
T  53040548 aaagtttgtgtattcaatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaaagagtgtc 53040462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 2831590 - 2831540
Alignment:
Q  242 tttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtc 292  Q
    |||||||||  |||||||||||||||| |||  ||||||||||||||||||    
T  2831590 tttgactttattaaaaaataatttcttgatttggaatccttaaagagtgtc 2831540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 3973840 - 3973782
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagaca 316  Q
    ||||||||||| |||  ||| ||||||||||||  ||||||||||| ||||||||||||    
T  3973840 aataatttcttaattgggaaaccttaaagagtgctcttagggcacttgttaacaagaca 3973782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 4009565 - 4009623
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagaca 316  Q
    ||||||||||| |||  ||| ||||||||||||  ||||||||||| ||||||||||||    
T  4009565 aataatttcttaattgggaaaccttaaagagtgctcttagggcacttgttaacaagaca 4009623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 7278263 - 7278301
Alignment:
Q  277 atccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  7278263 atccttaaagagtgcccttagggcactcgttagcaagac 7278301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 47915016 - 47915062
Alignment:
Q  241 ttttgacttttctaaaaaataatttctttattatgaatccttaaaga 287  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||||    
T  47915016 tttttacttttttaaagaataatttctttattatgaatgcttaaaga 47915062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 53766759 - 53766828
Alignment:
Q  246 acttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    |||||| ||||||||||||| || |||| |||| ||||||||||||||  ||  ||| ||||||||||||    
T  53766759 acttttttaaaaaataattttttcattaggaatacttaaagagtgtcccgagaacacacgttaacaagac 53766828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 48872 - 48755
Alignment:
Q  192 agtatgtttttgtcaaagtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgt 291  Q
    |||| |||||||| |||||||||||||||||||||||| |||||  ||||||||| |||| |||| ||||||||||||||||  |||| ||||||||||     
T  48872 agtaagtttttgttaaagtttatgaaatcaatgcattgaaaattgaagtttttgatttttttaaagaataatttctttattagaaatcattaaagagtgc 48773  T
Q  292 ccttagggcactcgttaa 309  Q
     |||||| ||||||||||    
T  48772 tcttaggacactcgttaa 48755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 49063 - 49013
Alignment:
Q  147 aaatgttaacaagtgctcttaggacattgtttagtgactttaaatagtatg 197  Q
    |||||||||||||||| |||  | ||||||||||| |||||||||||||||    
T  49063 aaatgttaacaagtgccctttaggcattgtttagtaactttaaatagtatg 49013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 67446 - 67533
Alignment:
Q  209 gtttatgaaatcaatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtcctta 296  Q
    ||||||||||||||||||||| |||||  ||||||| || ||| |||| |||||||||||||||| ||||  ||||| |||| |||||    
T  67446 gtttatgaaatcaatgcattgaaaattaaagtttttaacctttttaaagaataatttctttattaagaatttttaaatagtgccctta 67533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 19699 - 19660
Alignment:
Q  276 aatccttaaagagtgtccttagggcactcgttaacaagac 315  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  19699 aatccttaaagagtgccctaagggcactcgttaacaagac 19660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 4954 - 4897
Alignment:
Q  257 aaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    ||||||||||||||||   ||||||||||||||||| | |||| |||||||| |||||    
T  4954 aaataatttctttatttgaaatccttaaagagtgtcataagggaactcgttagcaaga 4897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 13492 - 13436
Alignment:
Q  258 aataatttctttattatgaatccttaaagagtgtccttagggcactcgttaacaaga 314  Q
    |||| |||||| |||| ||||| |||||||||| ||||||||||||| ||| |||||    
T  13492 aatagtttcttaattaggaatctttaaagagtgcccttagggcactcattagcaaga 13436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 219254 - 219166
Alignment:
Q  221 aatgcattggaaatttgagtttttgacttttctaaaaaataatttctttattatgaatccttaaagagtgtccttagggcactcgttaa 309  Q
    |||||||||||||||  | | |||||||||| |||| ||||||||| | |||   ||| |||||||| |||||||| | ||||||||||    
T  219254 aatgcattggaaattgaactatttgacttttgtaaagaataatttcctaatttaaaatgcttaaagaatgtccttaagacactcgttaa 219166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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