View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0263-INSERTION-13 (Length: 563)
Name: NF0263-INSERTION-13
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263-INSERTION-13 |
 | |
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| [»] scaffold1750 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 56 - 554
Target Start/End: Complemental strand, 35657339 - 35656841
Alignment:
| Q |
56 |
ttagaattctactatcttatcatatttgagatggtaattcggttggagtttagtttgattaaccacaaaacaacaccaatatctccaagtctcatttatt |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35657339 |
ttagaattctactatcttatcatatttgagatggtaattcggttggagtttagtttgattaaccacaaaacaacaccaatatctccaagtctcatttatt |
35657240 |
T |
|
| Q |
156 |
ccatgaatcaatcacttgacacatcaatttaatgttcattcatttttctcatatttggtagctaccgcaaggagagggtattttctatggcaactaaggc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35657239 |
ccatgaatcaatcacttgacacatcaatttaatgttcattcatttttctcatatttggtagctaccgcaaggagagggtattttctatggcaagtaaggc |
35657140 |
T |
|
| Q |
256 |
cattagtttcagacatgtccaaatccttcccttctactccatcaggcaatttccaatcaaattggtaaacaaggtttgctagcaccaattcattcactgc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35657139 |
cattagtttcagacatgtccaaatccttcccttctactccatcaggcaatttccaatcaaattggtaaacaaggtttgctagcaccaattcattcactgc |
35657040 |
T |
|
| Q |
356 |
aattccaaacaacacaccaggacaacccctccttcctgctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35657039 |
aattccaaacaacacaccaggacaacccctccttcctgctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctt |
35656940 |
T |
|
| Q |
456 |
tctggtttaaactctagaggttcttcccaacttgaagggtctctagaaataacccaagcattgactattacttgtgtaccagctgcaatgtcatagcca |
554 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35656939 |
tctggtttaaactctagaggttcttcccaacttgaagggtctctagaaatagcccaagcattgactattacttgtgtaccagctgcaatgtcatagcca |
35656841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 193 - 554
Target Start/End: Complemental strand, 35678602 - 35678241
Alignment:
| Q |
193 |
attcatttttctcatatttggtagctaccgcaaggagagggtattttctatggcaactaaggccattagtttcagacatgtccaaatccttcccttctac |
292 |
Q |
| |
|
|||||||| | || ||| ||||||| || ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35678602 |
attcatttatgtcgtatctggtagcaactgcaagtagagggtattttctacggcaagtaaggccattagtttcagacatgtccagatccttcccttctac |
35678503 |
T |
|
| Q |
293 |
tccatcaggcaatttccaatcaaattggtaaacaaggtttgctagcaccaattcattcactgcaattccaaacaacacaccaggacaacccctccttcct |
392 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |||| ||||||||||| | | ||| |||||||||| ||||||||||| ||||||||| |
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|
| T |
35678502 |
accatcaggcaatttccaatcaaattgatgaacaaggttcgctaaaaccaattcattgatagaaatagcaaacaacactccaggacaacctctccttcct |
35678403 |
T |
|
| Q |
393 |
gctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaacttgaag |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35678402 |
gctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaaattgaag |
35678303 |
T |
|
| Q |
493 |
ggtctctagaaataacccaagcattgactattacttgtgtaccagctgcaatgtcatagcca |
554 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
35678302 |
agtctcttgcaattgcccaagcattgactattacctgtgtaccagctgcaatgtcatagcca |
35678241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 191 - 554
Target Start/End: Complemental strand, 35650524 - 35650161
Alignment:
| Q |
191 |
tcattcatttttctcatatttggtagctaccgcaaggagagggtattttctatggcaactaaggccattagtttcagacatgtccaaatccttcccttct |
290 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| || ||||||||||| || ||| ||| ||||||||||||||||||||| ||| || | |
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| T |
35650524 |
tcattcatttttatcatatttggtagctactgcaaggaggggatattttctatgacatgtaatgccgacagtttcagacatgtccaaatctttcactgca |
35650425 |
T |
|
| Q |
291 |
actccatcaggcaatttccaatcaaattggtaaacaaggtttgctagcaccaattcattcactgcaattccaaacaacacaccaggacaacccctccttc |
390 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| ||||||| |
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|
| T |
35650424 |
actccatcaggcaatttccaatcaaaatggtgaacaaggtttgctagcaccaattcattgacagcaatagcaaacaacactccaggacaacctctccttc |
35650325 |
T |
|
| Q |
391 |
ctgctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaacttga |
490 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35650324 |
ctgctccaaatggaataagttcaaaatccaatcctttataatctattgaactgttcataaacctttctggtttaaactctagaggttgatcccaacttga |
35650225 |
T |
|
| Q |
491 |
agggtctctagaaataacccaagcattgactattacttgtgtaccagctgcaatgtcatagcca |
554 |
Q |
| |
|
||| ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35650224 |
aggatctcttgcaattgcccaagcattgactattacctgtgtaccagctgcaatgtcatagcca |
35650161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 196 - 553
Target Start/End: Complemental strand, 35642942 - 35642585
Alignment:
| Q |
196 |
catttttctcatatttggtagctaccgcaaggagagggtattttctatggcaactaaggccattagtttcagacatgtccaaatccttcccttctactcc |
295 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||| ||||||||| ||| ||| || | | |||||||||||||||||| ||| || | | ||| |
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|
| T |
35642942 |
catttttcacatatttggtagctattgcaatgagagggttttttctatgacaagtaaagctaacaacttcagacatgtccaaatctttctctgcaattcc |
35642843 |
T |
|
| Q |
296 |
atcaggcaatttccaatcaaattggtaaacaaggtttgctagcaccaattcattcactgcaattccaaacaacacaccaggacaacccctccttcctgct |
395 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
35642842 |
atcaggcaatttccaatcaaaatggtgaacaaggtttgctagcaccaattcattgacagcaatagcaaacaacactccaggacaacctctccttcctgct |
35642743 |
T |
|
| Q |
396 |
ccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaacttgaagggt |
495 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||| | ||||||||||||||||| |
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|
| T |
35642742 |
ccaaatgggataagttcaaaatcaaatcctttgaaatctattgaactgttcagaaacctttctggtttaaactctaaaggatgttcccaacttgaagggt |
35642643 |
T |
|
| Q |
496 |
ctctagaaataacccaagcattgactattacttgtgtaccagctgcaatgtcatagcc |
553 |
Q |
| |
|
|||| | |||| |||||||||||| ||| || | ||| |||||| ||||||||||||| |
|
|
| T |
35642642 |
ctcttgcaatagcccaagcattgattataacctctgttccagcttcaatgtcatagcc |
35642585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 53353079 - 53353047
Alignment:
| Q |
28 |
ctcaaaataagccaatctaaacggggccttaga |
60 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
53353079 |
ctcaaaataagccaatccaaacggggccttaga |
53353047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 293 - 554
Target Start/End: Complemental strand, 1408 - 1147
Alignment:
| Q |
293 |
tccatcaggcaatttccaatcaaattggtaaacaaggtttgctagcaccaattcattcactgcaattccaaacaacacaccaggacaacccctccttcct |
392 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
1408 |
tccatcaggcaatttccaatcaaaatggtgaacaaggtttgctagcaccaattcattgacagcaatagcaaacaacactccaggacaacctctccttcct |
1309 |
T |
|
| Q |
393 |
gctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaacttgaag |
492 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1308 |
gctccaaatggaataagttcaaaatccaatcctttataatctattgaactgttcataaacctttctggtttaaactctagaggttgatcccaacttgaag |
1209 |
T |
|
| Q |
493 |
ggtctctagaaataacccaagcattgactattacttgtgtaccagctgcaatgtcatagcca |
554 |
Q |
| |
|
| ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1208 |
gatctcttgcaattgcccaagcattgactattacctgtgtaccagctgcaatgtcatagcca |
1147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 6394776 - 6394745
Alignment:
| Q |
28 |
ctcaaaataagccaatctaaacggggccttag |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6394776 |
ctcaaaataagccaatctaaacggggccttag |
6394745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 42308072 - 42308104
Alignment:
| Q |
28 |
ctcaaaataagccaatctaaacggggccttaga |
60 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
42308072 |
ctcaaaataagccaatccaaacggggccttaga |
42308104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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