View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0263-INSERTION-3 (Length: 703)
Name: NF0263-INSERTION-3
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263-INSERTION-3 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Complemental strand, 43459117 - 43458606
Alignment:
| Q |
8 |
tctccattgtcttatgctttcaatgcattttctgtgaatgaaatgtttgctcctaggtggagcaaaccggtaagttctatcatatttctcgccacaatat |
107 |
Q |
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| T |
43459117 |
tctccattgtcttatgctttcaatgcattttctgtgaatgaaatgtttgctcctaggtggagcaaaccggtaagtactatcatatttctcgccacaatat |
43459018 |
T |
|
| Q |
108 |
gaaaatgtgattaaaaggttactagtccctaataaatttcaagattttgtttttagtctctataaaattttgtgactaaaaccggtgacggaaaacattg |
207 |
Q |
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| T |
43459017 |
gaaaatgtgattaaaaggttactagtccctaataaatttcaagattttgtttttagtctctataaaattttgtgactaaaaccggtgatggaaaacattg |
43458918 |
T |
|
| Q |
208 |
tgggactaaaatttgaatttgtcttatatagactaaacaaaa-ttttaaaattttagggggactaataatatattaacccaaacttatatttctgacttg |
306 |
Q |
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| T |
43458917 |
tgggactaaaatttgaatttgtcttatatagactaaaaaaaaattttaaaattttagggggactaataatatattaacccaaacttatatttctgacttg |
43458818 |
T |
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| Q |
307 |
atattttcatattttgcagtcttcagatggttttaactcattgggtgtagccacattaaatatctttgatgtttattcagaagaaaattggtactggata |
406 |
Q |
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| T |
43458817 |
atattttcatattttgcagtcttcagatggttttaactcattgggtgtagccacattaaatatctttgatgtttattcagaagaaaattggtactggata |
43458718 |
T |
|
| Q |
407 |
ggtgtagcagctcttcttggtttcactgttttctataatgttctattcacccttgcacttatgtacctaaaccgtaagacctcacattatgttcaatatg |
506 |
Q |
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| T |
43458717 |
ggtgtagcagctcttcttggtttcactgttttctataatgttctattcacccttgcacttatgtacctaaaccgtaagacctcacattatgttcaatatg |
43458618 |
T |
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| Q |
507 |
ttaagtaaaatc |
518 |
Q |
| |
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| T |
43458617 |
ttaagtaaaatc |
43458606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 577 - 694
Target Start/End: Complemental strand, 43458547 - 43458431
Alignment:
| Q |
577 |
attcactagctgttggaaagaaacaagcaattatatcagaagaagaagcaggtgaaatggaaactgggaggagattccaaggaggaacctagacttgcga |
676 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43458547 |
attcactagctgttggaaagaaacaagcaattatatcagaagaagaagcaagtgaaatggaaact-ggaggagattccaaggaggaacctagacttgcga |
43458449 |
T |
|
| Q |
677 |
ggaaggagtccaacaaag |
694 |
Q |
| |
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| T |
43458448 |
ggaaggagtccaacaaag |
43458431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 370 - 494
Target Start/End: Original strand, 4500286 - 4500410
Alignment:
| Q |
370 |
ctttgatgtttattcagaagaaaattggtactggataggtgtagcagctcttcttggtttcactgttttctataatgttctattcacccttgcacttatg |
469 |
Q |
| |
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||||||||||||| | | ||||||||||| ||||| |||| | ||||||| || ||| | |||||| || |||||||| ||||||||| |||||||| |
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| T |
4500286 |
ctttgatgtttatgctaatgaaaattggtattggattggtgctggagctcttgctgttttaattgttttttacaatgttctcttcacccttacacttatg |
4500385 |
T |
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| Q |
470 |
tacctaaaccgtaagacctcacatt |
494 |
Q |
| |
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||||||| ||||||||||| |||| |
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| T |
4500386 |
tacctaagtcgtaagacctcgcatt |
4500410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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