View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0263-INSERTION-6 (Length: 274)
Name: NF0263-INSERTION-6
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263-INSERTION-6 |
 | |
|
| [»] scaffold1432 (1 HSPs) |
| |
|
| [»] scaffold0236 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold1432 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 1684 - 1418
Alignment:
| Q |
6 |
caaattaaatgtcttttaactctttataaaatatctctgcattgttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1684 |
caaattaaatgtcttttaactctttataaaatatctctgcatttttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgta |
1585 |
T |
|
| Q |
106 |
tcgggtgtgtttggtatttgaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcaattgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1584 |
tcgggtgtgtttggtatttgaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctc--ttgg |
1487 |
T |
|
| Q |
206 |
ccttacaagtaaaatttctaacaataaaaataaccgaaccctatcctttctcaatctctgctcttccat |
274 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1486 |
ccttacaagtaaaatttcaaacaataaaaataaccgaaccctatcctctctcaatctctgctcttccat |
1418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 45 - 274
Target Start/End: Original strand, 21733 - 21955
Alignment:
| Q |
45 |
cattgttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagta |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
21733 |
cattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgatttggtttact- |
21831 |
T |
|
| Q |
145 |
gtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcaattggccttacaagtaaaatttctaacaataaaaataaccgaac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
21832 |
----agtattttgagtaattggattatagcggctttagctaaattcaccatcctc--ttggccttacaagtaaaatttcaaacaataaaaataactgaac |
21925 |
T |
|
| Q |
245 |
cctatcctttctcaatctctgctcttccat |
274 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |
|
|
| T |
21926 |
cctagtctttctcaatctctgatcttccat |
21955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 328 times since January 2019
Visitors: 2564