View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0263_high_13 (Length: 251)

Name: NF0263_high_13
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0263_high_13
NF0263_high_13
[»] chr6 (25 HSPs)
chr6 (1-215)||(14017002-14017213)
chr6 (28-215)||(14112428-14112609)
chr6 (57-218)||(14027049-14027204)
chr6 (28-218)||(14026948-14027132)
chr6 (104-219)||(13890940-13891052)
chr6 (132-222)||(14017058-14017148)
chr6 (57-222)||(13873144-13873303)
chr6 (29-140)||(13942996-13943104)
chr6 (22-148)||(13470999-13471122)
chr6 (28-143)||(13860954-13861066)
chr6 (61-218)||(13873076-13873227)
chr6 (18-222)||(13873216-13873414)
chr6 (28-143)||(14086616-14086728)
chr6 (104-215)||(13470863-13470971)
chr6 (57-144)||(13890940-13891024)
chr6 (132-218)||(13860954-13861037)
chr6 (57-140)||(13470863-13470943)
chr6 (132-215)||(13943024-13943104)
chr6 (132-222)||(13471000-13471087)
chr6 (132-222)||(14112457-14112544)
chr6 (132-218)||(14086645-14086728)
chr6 (179-222)||(13891009-13891052)
chr6 (179-222)||(14027021-14027064)
chr6 (57-143)||(13873076-13873159)
chr6 (35-67)||(13891086-13891118)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14017002 - 14017213
Alignment:
Q  1 ttagaaatctaaaattgtatcatccttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtg 100  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  14017002 ttagaaatctaaaaacgtatcctccttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaattcttccttccaaaccaatgttgtg 14017101  T
Q  101 gctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | || |||   |||||||||||||||||||||||    
T  14017102 gctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccatccaaatcattggtgt---tgagatcaagaaattgcaagttg 14017198  T
Q  201 gagagatttccaagt 215  Q
    ||||||| |||||||    
T  14017199 gagagatctccaagt 14017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 14112428 - 14112609
Alignment:
Q  28 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 127  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |   |||  |||||||||||||||||||||||||||    
T  14112428 caagataaagctcttgtagatttgtaagctttccaatttgagatggaatgcttccttcaaaacca---ttgatgctgagatcaagaaattgcaagttgga 14112524  T
Q  128 gagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 215  Q
     ||||||||||||||||||||||||||||||||||||| | | ||||   |||||||||||||||||||||||||||||| |||||||    
T  14112525 aagatttccaagttgagatggaatgcttccttccaaaccattattgt---tgagatcaagaaattgcaagttggagagatctccaagt 14112609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 14027049 - 14027204
Alignment:
Q  57 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttc 156  Q
    |||||||||||||||||||||||||||||||||  | || ||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14027049 tttccaagttgagatggaatgcttccttccaaataattgatg---ctgagatcaagaaattgcaagttggagagatttccaagttgacatggaatgcttc 14027145  T
Q  157 cttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 218  Q
    ||||||||  |   ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  14027146 cttccaaataa---ttgtggctgagatcaagaaattgcaagttggagagacctccaagttga 14027204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 14026948 - 14027132
Alignment:
Q  28 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |   ||||||  |||  | |    |||   |||||||||||||||||||||||    
T  14026948 caagataaagctcttgtaggtttgtaagctttccaagttgagatggtaattttcctttaaaaaaatttccatgg---agatcaagaaattgcaagttgga 14027044  T
Q  128 gagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 218  Q
    |||||||||||||||||||||||||||||||||||||  |   |||  |||||||||||||||||||||||||||||||||||||||||||    
T  14027045 gagatttccaagttgagatggaatgcttccttccaaataa---ttgatgctgagatcaagaaattgcaagttggagagatttccaagttga 14027132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 13891052 - 13890940
Alignment:
Q  104 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaaaga---ttgcggctaagatcaagaaattgcaagttggag 13890956  T
Q  204 agatttccaagttgag 219  Q
    ||||||||||||||||    
T  13890955 agatttccaagttgag 13890940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 14017058 - 14017148
Alignment:
Q  132 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 222  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14017058 tttccaagttgagatggaattcttccttccaaaccaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 14017148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 13873303 - 13873144
Alignment:
Q  57 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttc 156  Q
    ||||||||||| |||||||| ||||||||||||  | |||| |   |||||| |||||||| |||||||||||||||| ||||||| ||||| |||||||    
T  13873303 tttccaagttgggatggaatccttccttccaaatcattgtttt---tgagatgaagaaatttcaagttggagagattttcaagttgggatggtatgcttc 13873207  T
Q  157 cttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 222  Q
    |||||||||||   |||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  13873206 cttccaaacga---ttgtagctgagatcaagaaattgcaagttggagagatttccgagtttagatg 13873144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 13942996 - 13943104
Alignment:
Q  29 aagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggag 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |   |||| ||||||||||||||||||||||||||||    
T  13942996 aagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttggag 13943092  T
Q  129 agatttccaagt 140  Q
    |||| |||||||    
T  13943093 agatctccaagt 13943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 13471122 - 13470999
Alignment:
Q  22 atccttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaa 121  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||   | | || | |||||||||||||||||||||    
T  13471122 atcctccaagataaagcttttgtaggtttgtaagctttccaagttgagatggaatatttccttccaa---attattatagctgagatcaagaaattgcaa 13471026  T
Q  122 gttggagagatttccaagttgagatgg 148  Q
    |||||||||||||||||||||||||||    
T  13471025 gttggagagatttccaagttgagatgg 13470999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 13861066 - 13860954
Alignment:
Q  28 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 127  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||    
T  13861066 caagataaagctcttgtaggttcacaagctttccaagttgagatggaatgcttccttccaaaaaa---ttgtagctgagatcaagaaattgcaagttgga 13860970  T
Q  128 gagatttccaagttga 143  Q
    ||||| ||||||||||    
T  13860969 gagatctccaagttga 13860954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 13873227 - 13873076
Alignment:
Q  61 caagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttc 160  Q
    ||||||| ||||| ||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  13873227 caagttgggatggtatgcttccttccaaacga---ttgtagctgagatcaagaaattgcaagttggagagatttccgagtttagatggaatgcttccttc 13873131  T
Q  161 caaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 218  Q
     ||| ||   |||| ||| ||||||| |||| | |  |||||||||||||||||||||    
T  13873130 taaatga---ttgttgcttagatcaataaatcgaacattggagagatttccaagttga 13873076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 13873414 - 13873216
Alignment:
Q  18 tatcatccttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaatt 117  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||||| |||| ||  ||||||  ||| |||| |       ||||||||||||||    
T  13873414 tatcctcctccaagataaagatcttgtaggtttgtaagctttccaagttgatatggtatttttccttttaaa-gaatttccaaa--gagatcaagaaatt 13873318  T
Q  118 gcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttg 217  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||  | |||| |   |||||| |||||||| |||||||||||||||| |||||||    
T  13873317 gcaagttggagagatttccaagttgggatggaatccttccttccaaatcattgtttt---tgagatgaagaaatttcaagttggagagattttcaagttg 13873221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 14086616 - 14086728
Alignment:
Q  28 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 127  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||   |   |||| |||||||||||||||||||||||||||    
T  14086616 caagataaagctcttgtaggttcgtaagctttccaagttgatatggaatacttccttccaagtca---ttgttgctgagatcaagaaattgcaagttgga 14086712  T
Q  128 gagatttccaagttga 143  Q
    ||||| ||||||||||    
T  14086713 gagatctccaagttga 14086728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 13470971 - 13470863
Alignment:
Q  104 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggag 203  Q
    |||||||||| ||| || || | |||||||||||||||||| ||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||    
T  13470971 gagatcaagatattccatgtcgaagagatttccaagttgagttggaatgcttccttccaaacga---ttgttcctgagatcaagaaattgcaagttggag 13470875  T
Q  204 agatttccaagt 215  Q
    |||| |||||||    
T  13470874 agatctccaagt 13470863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 13891024 - 13890940
Alignment:
Q  57 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgag 144  Q
    ||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  13891024 tttccaagttgagatggaatgcttccttccaaaaga---ttgcggctaagatcaagaaattgcaagttggagagatttccaagttgag 13890940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 13861037 - 13860954
Alignment:
Q  132 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 218  Q
    |||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13861037 tttccaagttgagatggaatgcttccttccaaaaaa---ttgtagctgagatcaagaaattgcaagttggagagatctccaagttga 13860954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 13470943 - 13470863
Alignment:
Q  57 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 140  Q
    ||||||||||||| |||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||| |||||||    
T  13470943 tttccaagttgagttggaatgcttccttccaaacgattgttc---ctgagatcaagaaattgcaagttggagagatctccaagt 13470863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 13943024 - 13943104
Alignment:
Q  132 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 215  Q
    |||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||||| |||||||    
T  13943024 tttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttggagagatctccaagt 13943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 13471087 - 13471000
Alignment:
Q  132 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 222  Q
    ||||||||||||||||||||  |||||||||||  |   || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  13471087 tttccaagttgagatggaatatttccttccaaatta---ttatagctgagatcaagaaattgcaagttggagagatttccaagttgagatg 13471000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 14112457 - 14112544
Alignment:
Q  132 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 222  Q
    ||||||| ||||||||||||||||||||| |||| | || ||   |||||||||||||||||||||||||| |||||||||||||||||||    
T  14112457 tttccaatttgagatggaatgcttccttcaaaaccattgatg---ctgagatcaagaaattgcaagttggaaagatttccaagttgagatg 14112544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 14086645 - 14086728
Alignment:
Q  132 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 218  Q
    |||||||||||| ||||||| |||||||||||   | |||||   ||||||||||||||||||||||||||||||| ||||||||||    
T  14086645 tttccaagttgatatggaatacttccttccaagtcattgttg---ctgagatcaagaaattgcaagttggagagatctccaagttga 14086728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 13891052 - 13891009
Alignment:
Q  179 gagatcaagaaattgcaagttggagagatttccaagttgagatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagatttccaagttgagatg 13891009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 14027021 - 14027064
Alignment:
Q  179 gagatcaagaaattgcaagttggagagatttccaagttgagatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14027021 gagatcaagaaattgcaagttggagagatttccaagttgagatg 14027064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 13873159 - 13873076
Alignment:
Q  57 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 143  Q
    ||||| |||| |||||||||||||||||| ||| ||   |||| ||| ||||||| |||| | |  |||||||||||||||||||||    
T  13873159 tttccgagtttagatggaatgcttccttctaaatga---ttgttgcttagatcaataaatcgaacattggagagatttccaagttga 13873076  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 13891118 - 13891086
Alignment:
Q  35 aagctcttgtaggtttgtaagctttccaagttg 67  Q
    ||||||||||||||| |||||||||||||||||    
T  13891118 aagctcttgtaggttggtaagctttccaagttg 13891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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