View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0263_high_4 (Length: 358)

Name: NF0263_high_4
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0263_high_4
NF0263_high_4
[»] chr6 (8 HSPs)
chr6 (63-329)||(9759448-9759715)
chr6 (177-328)||(7218410-7218561)
chr6 (177-315)||(28604947-28605085)
chr6 (179-327)||(17227948-17228096)
chr6 (177-222)||(667382-667427)
chr6 (177-318)||(18295456-18295597)
chr6 (8-48)||(9759408-9759448)
chr6 (177-225)||(2894351-2894399)
[»] chr4 (17 HSPs)
chr4 (177-315)||(29123499-29123637)
chr4 (177-315)||(8110942-8111080)
chr4 (177-315)||(4303262-4303400)
chr4 (177-315)||(22340603-22340741)
chr4 (177-321)||(12915809-12915953)
chr4 (177-286)||(17826841-17826950)
chr4 (177-310)||(36951230-36951363)
chr4 (177-315)||(18116442-18116580)
chr4 (177-314)||(23158210-23158347)
chr4 (191-315)||(15705634-15705758)
chr4 (177-315)||(3621526-3621664)
chr4 (177-223)||(24059759-24059805)
chr4 (177-310)||(50693814-50693947)
chr4 (177-318)||(51872706-51872847)
chr4 (177-240)||(17469184-17469247)
chr4 (192-315)||(36279278-36279401)
chr4 (270-315)||(15649220-15649265)
[»] scaffold0003 (1 HSPs)
scaffold0003 (177-315)||(224786-224924)
[»] chr5 (8 HSPs)
chr5 (177-315)||(11266049-11266187)
chr5 (177-315)||(27891722-27891860)
chr5 (197-321)||(29150323-29150446)
chr5 (191-311)||(5825043-5825163)
chr5 (191-315)||(6678650-6678774)
chr5 (177-240)||(29322892-29322955)
chr5 (188-252)||(8896333-8896397)
chr5 (190-294)||(38931814-38931918)
[»] chr3 (14 HSPs)
chr3 (177-318)||(23571681-23571822)
chr3 (177-315)||(8595281-8595419)
chr3 (177-315)||(42462744-42462882)
chr3 (177-315)||(48547578-48547716)
chr3 (177-315)||(23603287-23603424)
chr3 (177-321)||(39632892-39633036)
chr3 (177-240)||(16664075-16664138)
chr3 (192-318)||(3514705-3514831)
chr3 (177-249)||(42459363-42459435)
chr3 (191-315)||(53152159-53152283)
chr3 (179-241)||(10754161-10754223)
chr3 (194-319)||(9819080-9819205)
chr3 (191-315)||(17153881-17154005)
chr3 (177-240)||(52196385-52196448)
[»] chr1 (7 HSPs)
chr1 (188-315)||(49369791-49369918)
chr1 (177-315)||(41342868-41343006)
chr1 (191-319)||(10003951-10004079)
chr1 (177-246)||(37668946-37669015)
chr1 (177-225)||(24545117-24545165)
chr1 (177-316)||(27029975-27030114)
chr1 (179-228)||(28520899-28520948)
[»] scaffold0032 (1 HSPs)
scaffold0032 (177-315)||(58456-58594)
[»] chr7 (17 HSPs)
chr7 (177-315)||(20705552-20705690)
chr7 (177-315)||(20873596-20873734)
chr7 (177-315)||(40891824-40891962)
chr7 (177-315)||(586808-586946)
chr7 (177-225)||(27987627-27987675)
chr7 (177-319)||(36575442-36575584)
chr7 (177-240)||(22865808-22865871)
chr7 (188-226)||(18815464-18815502)
chr7 (177-319)||(24819717-24819859)
chr7 (177-318)||(12121607-12121748)
chr7 (179-240)||(27868999-27869060)
chr7 (191-315)||(37075664-37075788)
chr7 (185-240)||(5196732-5196787)
chr7 (177-240)||(8457244-8457307)
chr7 (177-216)||(47548969-47549008)
chr7 (177-216)||(47553412-47553451)
chr7 (197-315)||(9403205-9403323)
[»] chr2 (9 HSPs)
chr2 (177-315)||(38938496-38938634)
chr2 (179-314)||(22300788-22300923)
chr2 (191-315)||(30275913-30276037)
chr2 (191-318)||(32349895-32350022)
chr2 (188-312)||(1258488-1258612)
chr2 (177-315)||(27914661-27914799)
chr2 (191-311)||(21963436-21963556)
chr2 (191-293)||(21964639-21964741)
chr2 (177-315)||(23384867-23385005)
[»] scaffold0041 (1 HSPs)
scaffold0041 (177-315)||(74322-74460)
[»] chr8 (5 HSPs)
chr8 (177-318)||(26077786-26077927)
chr8 (177-241)||(29532455-29532519)
chr8 (177-240)||(10801740-10801803)
chr8 (177-307)||(31423301-31423431)
chr8 (177-223)||(26390302-26390348)
[»] scaffold0289 (1 HSPs)
scaffold0289 (179-240)||(11164-11225)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 63 - 329
Target Start/End: Original strand, 9759448 - 9759715
Alignment:
Q  63 ttctgaaatagtgatatcatatctaattctacttctgagcttattaattaaggtaacaaatcctacaaaatccnnnnnnntccaattaat-aaacaatct 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||| || |||||||||    
T  9759448 ttctgaaatagtgatatcatatctaattctacttctgagcttattaattaaggtaacaaatcctacaaaattaaaaaaaaatcaatttattaaacaatct 9759547  T
Q  162 attgaaattagaatgtttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgta 261  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||  |||||||    
T  9759548 attgaaattagaatgtttttgtatgacatttctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgta 9759647  T
Q  262 ttgtgcggctttgtgtggtaaggaggatgaaagagaccatatgttttttcaatgcgaccactacgggc 329  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  9759648 ttgtgcggctttgcgtggtaaggaggatgaaagggaccatctgttttttcaatgcgaccactacgggc 9759715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 328
Target Start/End: Original strand, 7218410 - 7218561
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||| |||||||||||||||||||||||||| ||| || | ||||| |||||||||||||| |    ||| ||||||||||| |||||    
T  7218410 tttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaaggaatgtctttgaggctaacaatgtatattgtgcggccttgtg 7218509  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgaccactacggg 328  Q
    |||||||||||| |||||||||||| | ||||| ||||| || || ||||||    
T  7218510 tggtaaggaggaggaaagagaccatttatttttccaatgtgatcattacggg 7218561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 28604947 - 28605085
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||| ||| | || || || ||  ||||||   |   ||||| ||| ||||| |||||    
T  28604947 tttttgtatggcgtctttttctgaatagacttgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtg 28605046  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| ||||||| |||||    
T  28605047 tggtaaggaggaggaaagagaccatttgtttttccaatg 28605085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 327
Target Start/End: Complemental strand, 17228096 - 17227948
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtg 278  Q
    ||||| || ||||||||||| |||||||||||||||||||||||| || ||||||| |||||| |||| |   || |||||  ||| ||||| |||||||    
T  17228096 tttgtctggcgtctctttctaaatagacttgctacaaaggacaatttgcgcaaaaggaatgtccttgatgtttcacttgtgacttgcgcggccttgtgtg 17227997  T
Q  279 gtaaggaggatgaaagagaccatatgttttttcaatgcgaccactacgg 327  Q
    || |||  || || || |||||| |||||||  | ||||||||||||||    
T  17227996 gtgaggtagaggacagggaccatttgtttttcaagtgcgaccactacgg 17227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 667427 - 667382
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaa 222  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  667427 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 667382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 18295456 - 18295597
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  | ||||  ||   ||| | |||||  ||||| ||    
T  18295456 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatg 18295555  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  18295556 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 18295597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 9759408 - 9759448
Alignment:
Q  8 cgaagaaaatatcaatgtgtatgaggagacaatgttgtgat 48  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  9759408 cgaaaaaaatatcaatgtgtatgaagagacaatgttgtgat 9759448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 2894399 - 2894351
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatct 225  Q
    ||||||| || || || |||||||||||||||||||||||||| |||||    
T  2894399 tttttgtttggcggctttttctgaatagacttgctacaaaggataatct 2894351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 29123499 - 29123637
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| || |||| |||| |   | ||||||||| |||||    
T  29123499 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtg 29123598  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  29123599 tggtaaggaggaggaaagagaccatttgttttttcaatg 29123637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 8111080 - 8110942
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| || || ||||||||||   |   ||||| ||| ||||| |||||    
T  8111080 tttttgtatggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtg 8110981  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| | |||||||||||    
T  8110980 tggtaaggaggaggaaagggaccatttcttttttcaatg 8110942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 4303262 - 4303400
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||  |||| || ||| || || | || |||| |   | ||||||||| |||||    
T  4303262 tttttgtttggcgtctttttctgaatagacttgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtg 4303361  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  4303362 tggtaaggaggaggaaagggaccatttgttttttcaatg 4303400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 22340741 - 22340603
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||| ||  |||| || |||||| || |||| |||| |   | ||||| ||| |||||    
T  22340741 tttttgtttggcgtctctttctaaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtg 22340642  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||| ||| |||||||||||||    
T  22340641 tggtaaggaggaggaaagagatcatttgttttttcaatg 22340603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 321
Target Start/End: Complemental strand, 12915953 - 12915809
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||||  || ||||||| |||||| ||| ||| |    ||| | ||||||||| |||||    
T  12915953 tttttgtttggcgtctctttctgaatagaattgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtg 12915854  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgacca 321  Q
    |||||||||||| ||||||||| || | ||||||||||| |||||    
T  12915853 tggtaaggaggaggaaagagacaatttattttttcaatgtgacca 12915809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 17826841 - 17826950
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||  |||| || |||||| || |||| |||| ||  | ||||||||| |||||    
T  17826841 tttttgtttggcgtctctttctgaatagacttgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtg 17826940  T
Q  277 tggtaaggag 286  Q
    ||||||||||    
T  17826941 tggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 36951363 - 36951230
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||| || | ||||||||||| |||||  ||||  || ||  ||| ||| |||||||    
T  36951363 tttttgtatggcgtctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgtatttgatcccactcttatggcttgcgcgactttgtg 36951264  T
Q  277 tggtaaggaggatgaaagagaccatatgtttttt 310  Q
    ||||||||| || ||||| || ||| ||||||||    
T  36951263 tggtaaggaagaggaaagggatcatttgtttttt 36951230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 18116442 - 18116580
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||  |||| || |||||| ||||||| ||   ||| | |||||  || || ||    
T  18116442 tttttgtttggcgtctctttctgaatagatttgctacaaaggacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatg 18116541  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| ||||||| |||||    
T  18116542 tggtaaggaggaggaaagggatcatttgtttttccaatg 18116580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 23158210 - 23158347
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  ||||||| ||   ||| | |||||  ||||| ||    
T  23158210 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatg 23158309  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaat 314  Q
    |||||||||||| ||||| || ||| ||||||| ||||    
T  23158310 tggtaaggaggaggaaagggatcatttgtttttccaat 23158347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 15705634 - 15705758
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||| ||||||| ||||||||||||| ||||||||  |||| || ||| || || |||| |||| ||  | ||||||||| ||||||| ||||||||| |    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| |||||||||||||    
T  15705734 aaagggatcatttgttttttcaatg 15705758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 3621664 - 3621526
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||| ||| | || || || ||  ||||||   |   ||||| ||| ||| | |||||    
T  3621664 tttttgtatggcgtctttttctgaatagacttgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtg 3621565  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| | ||||| |||||    
T  3621564 tggtaaggaggaggaaagagaccatttttttttccaatg 3621526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 24059805 - 24059759
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaat 223  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  24059805 tttttgtttgacgtctctttatgagtagacttgctacaaaggacaat 24059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 310
Target Start/End: Original strand, 50693814 - 50693947
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||  || | |||||||||||  ||||  ||||  ||  |  ||| ||| |||||||    
T  50693814 tttttgtttggcgtctctttctgaatagacttgctacaaaagataacttgcgtaaaagaaatgtaattgatcccactcttacggcttgcgcgactttgtg 50693913  T
Q  277 tggtaaggaggatgaaagagaccatatgtttttt 310  Q
    ||||||||| || ||||| || ||| ||||||||    
T  50693914 tggtaaggaagaggaaagggatcatttgtttttt 50693947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 51872847 - 51872706
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  ||||||| ||   ||| |  | ||  ||||| |     
T  51872847 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatt 51872748  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  51872747 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 51872706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 17469184 - 17469247
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || | ||||||||||||||||||||||||||| || ||  || |||||||||||||    
T  17469184 tttttgtttggcatctctttctgaatagacttgctacaaaagataacttgcgcaaaagaaatgt 17469247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 36279278 - 36279401
Alignment:
Q  192 tctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatga 291  Q
    |||||||||||||||||||||||||||| |||||  | || || |||||  ||||||| ||   ||| | |||||  ||||| ||||||||||||||  |    
T  36279278 tctttctgaatagacttgctacaaaggataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaa 36279377  T
Q  292 aagagaccatatgttttttcaatg 315  Q
    ||| || ||| ||||||| |||||    
T  36279378 aagggatcatttgtttttccaatg 36279401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 15649220 - 15649265
Alignment:
Q  270 ctttgtgtggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||| |||||||||||||| |||||||||||| | |||||||||||    
T  15649220 ctttatgtggtaaggaggaggaaagagaccatttattttttcaatg 15649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 224786 - 224924
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||| |||||||||||||||||||||||||||||| || | ||||| |||||| ||||||| |    ||| ||||||||||| |||||    
T  224786 tttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaaggaatgtccttgaggctaacaatgtatattgtgcggccttgtg 224885  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| | ||||| |||||    
T  224886 tggtaaggaggaggaaagagaccatttatttttccaatg 224924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 11266187 - 11266049
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   ||| | ||| ||||| |||||    
T  11266187 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtg 11266088  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  11266087 tggtaaggaggaggaaagggaccatttgttttttcaatg 11266049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 27891860 - 27891722
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || | ||||||||||||||||||||| ||||||||||| ||| |||| || || ||| || |||   |   ||||| ||| ||||| |||||    
T  27891860 tttttgtctggcatctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtg 27891761  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  27891760 tggtaaggaggaggaaagggaccatttgttttttcaatg 27891722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 29150446 - 29150323
Alignment:
Q  197 ctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatgaaagag 296  Q
    ||||||||||||||||||||||||||  || ||||||| |||||| | ||||| |    ||| | ||||||||| || ||||||||||| || |||||||    
T  29150446 ctgaatagacttgctacaaaggacaacttgcgcaaaaggaatgtcct-gaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagag 29150348  T
Q  297 accatatgttttttcaatgcgacca 321  Q
    ||||| | ||||||||||| |||||    
T  29150347 accatttattttttcaatgtgacca 29150323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 311
Target Start/End: Original strand, 5825043 - 5825163
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  5825043 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggagg 5825142  T
Q  291 aaagagaccatatgttttttc 311  Q
    |||| || ||| |||||||||    
T  5825143 aaagggatcatttgttttttc 5825163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 6678650 - 6678774
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| | |||||||||||| |    
T  6678650 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggagg 6678749  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| |||||||||||||    
T  6678750 aaagtgatcatttgttttttcaatg 6678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 29322955 - 29322892
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| || | |||||||||||    
T  29322955 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgt 29322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 8896397 - 8896333
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccac 252  Q
    ||||||||||||||||||||||||||||| || ||  || | |||||||||||| |||| |||||    
T  8896397 cgtctctttctgaatagacttgctacaaaagataacttgcgtaaaagaaatgtcattgatgccac 8896333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 38931918 - 38931814
Alignment:
Q  190 tctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggat 289  Q
    ||||||||||||||||||||||||||| || ||  || | |||||||||||| ||||  ||||  || ||  ||| ||| |||||||||||||||| ||     
T  38931918 tctctttctgaatagacttgctacaaaagataacttgcgtaaaagaaatgtcattgatcccactcttatggcttgcgcgactttgtgtggtaaggaagag 38931819  T
Q  290 gaaag 294  Q
    |||||    
T  38931818 gaaag 38931814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 23571681 - 23571822
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |  |||||| ||||||| ||   ||| | |||||  ||||| ||    
T  23571681 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatg 23571780  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  23571781 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 23571822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 8595419 - 8595281
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||  | || || ||| || || |||| |||| ||  | ||||||||| |||||    
T  8595419 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtg 8595320  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    || ||||||||| ||||| |||||| |||||||||||||    
T  8595319 tgctaaggaggaggaaagggaccatttgttttttcaatg 8595281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 42462882 - 42462744
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||  |||| || |||||| || |||| |||  ||  | ||||||| | ||||     
T  42462882 tttttgtttggcgtttctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgta 42462783  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    || ||||||||| |||||||| ||| |||||||||||||    
T  42462782 tgataaggaggaggaaagagatcatttgttttttcaatg 42462744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 48547716 - 48547578
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||| ||||||||||| ||| |||| || || ||| ||||||   |   ||| | ||| ||||| |||||    
T  48547716 tttttgtctggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtg 48547617  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  48547616 tggtaaggaggaggaaagggaccatttgttttttcaatg 48547578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 23603424 - 23603287
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||| |||||||| ||  |||| || |||||| || || | |||  |   | ||||||||| |||||    
T  23603424 tttttgtttggcgactctttctgaatagacttgctactaaggacaaccttcgcaagaggaatgtccttcag-ctacaaatacttcttgtgcggccttgtg 23603326  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||| ||| |||||||||||||    
T  23603325 tggtaaggaggaggaaagagatcatctgttttttcaatg 23603287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 39632892 - 39633036
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| ||   |||||||||||| ||||  ||||  || ||  ||| ||| ||| |||    
T  39632892 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcataaaagaaatgtcattgactccactcttatggcttgcgcgacttcgtg 39632991  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgacca 321  Q
    ||||||||| || ||||| || ||| |||||||||| || |||||    
T  39632992 tggtaaggaagaggaaagggatcatctgttttttcattgtgacca 39633036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 16664138 - 16664075
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| || |||||||||||||    
T  16664138 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgcaaaagaaatgt 16664075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 3514831 - 3514705
Alignment:
Q  192 tctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatga 291  Q
    |||||||||||||||||||||||||||| |||||  |||| || |||||  ||||||| |    ||| | |||||  ||||| |||||||||||||| ||    
T  3514831 tctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggagga 3514732  T
Q  292 aagagaccatatgttttttcaatgcga 318  Q
    ||| || ||| ||||||| ||||||||    
T  3514731 aagggatcatttgtttttccaatgcga 3514705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 42459363 - 42459435
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggc 249  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||  ||  |||||| |||||| |||||||    
T  42459363 tttttgtttgacgtctttttctgaatagaattgctacaaaggacaacttgcacaaaaggaatgtccttgaggc 42459435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 53152159 - 53152283
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||| |||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| ||||| |||||||| |    
T  53152159 ctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggagg 53152258  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    ||||||| ||| |||||||||||||    
T  53152259 aaagagatcatttgttttttcaatg 53152283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 10754223 - 10754161
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtc 241  Q
    ||||| || ||||||||| ||||||||||||||||||| || ||| |||| ||||||||||||    
T  10754223 tttgtttggcgtctctttatgaatagacttgctacaaaagataatttgtgtaaaagaaatgtc 10754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 9819205 - 9819080
Alignment:
Q  194 tttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatgaaa 293  Q
    |||||||||||||||||||||||||| |||||  | || || |||||| ||||||| ||   ||| | |||||  ||||| |||||||||||||| || |    
T  9819205 tttctgaatagacttgctacaaaggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaca 9819106  T
Q  294 gagaccatatgttttttcaatgcgac 319  Q
      || ||| ||||||| |||||||||    
T  9819105 aggatcatttgtttttccaatgcgac 9819080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 17153881 - 17154005
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||| |||||||||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||| ||||| |    
T  17153881 ctctttatgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggagg 17153980  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| ||||||| |||||    
T  17153981 aaagggatcatttgtttttccaatg 17154005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 52196448 - 52196385
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || || |||||||||||||||||||||||||| || ||| || | |||||||||||    
T  52196448 tttttgtttggcgcctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgt 52196385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 49369918 - 49369791
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggagg 287  Q
    ||||||||||||||||||||||||||||||||||||||  |||| || |||||| || ||||  ||| ||  | ||||||||| ||||||||||||||||    
T  49369918 cgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggagg 49369819  T
Q  288 atgaaagagaccatatgttttttcaatg 315  Q
    | ||||| || ||| |||||||||||||    
T  49369818 aggaaagggatcatttgttttttcaatg 49369791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 41342868 - 41343006
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||  |||| || |||||| ||||||| ||   ||| | |||||  || || ||    
T  41342868 tttttgtttggcgtctctttctgaatagatttgctacaaaggacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatg 41342967  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| ||||||| |||||    
T  41342968 tggtaaggaggaggaaagggatcatttgtttttccaatg 41343006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 10004079 - 10003951
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||||||||||||||||||||||||| |||||  | || |  |||||||||||||| ||   ||| | |||||  ||| | |||||||||||||| |    
T  10004079 ctctttctgaatagacttgctacaaaggataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggagg 10003980  T
Q  291 aaagagaccatatgttttttcaatgcgac 319  Q
    |||| || ||| |||||||  ||||||||    
T  10003979 aaagggatcatttgtttttcgaatgcgac 10003951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 37669015 - 37668946
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttga 246  Q
    ||||||| || |||||||||||||||||||||| |||||| || ||| || | |||||||||||| ||||    
T  37669015 tttttgtttggcgtctctttctgaatagacttgatacaaaagataatttgcgtaaaagaaatgtcattga 37668946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 24545117 - 24545165
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatct 225  Q
    ||||||| || |||||||||||||| ||||||||||||||||| |||||    
T  24545117 tttttgtctggcgtctctttctgaacagacttgctacaaaggataatct 24545165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 27030114 - 27029975
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || || ||| ||||||||||||||| |||||| |||||  | || || |||||| ||||||| ||   ||| | |||||  ||| | ||    
T  27030114 tttttgtttggcggctttttttgaatagacttgctataaaggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatg 27030015  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgc 316  Q
    |||||||||||| |||||||| ||| ||||||| ||||||    
T  27030014 tggtaaggaggaggaaagagatcatttgtttttccaatgc 27029975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 28520899 - 28520948
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtg 228  Q
    |||||||| |||||||| |||||||||||||||||| |||| ||| ||||    
T  28520899 tttgtatggcgtctcttcctgaatagacttgctacagaggataatttgtg 28520948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 58456 - 58594
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   | | | ||||||||| |||||    
T  58456 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtg 58555  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||| | |||||||||||||    
T  58556 tggtaaggaggaggaaagggaccgtttgttttttcaatg 58594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 20705552 - 20705690
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| |||||||| |||||| |||| ||||| ||  ||||||   |   ||||  |||||||||||||||    
T  20705552 tttttgtatggcgtctttttctgaatagacttgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtg 20705651  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| ||||||| |||||    
T  20705652 tggtaaggaggaggaaagagaccatttgtttttccaatg 20705690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 20873596 - 20873734
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| |||||||| |||||| |||| ||||| ||  ||||||   |   ||||  |||||||||||||||    
T  20873596 tttttgtatggcgtctttttctgaatagacttgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtg 20873695  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| ||||||| |||||    
T  20873696 tggtaaggaggaggaaagagaccatttgtttttccaatg 20873734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 40891824 - 40891962
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   ||| | ||||| ||| |||||    
T  40891824 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtg 40891923  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||  |||||| ||||||| |||||    
T  40891924 tggtaaggaggaggaaatggaccatttgtttttccaatg 40891962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 586946 - 586808
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||||||  | ||||| |||||| ||||||| ||   ||| |   ||| ||| || ||    
T  586946 tttttgtttggcgtctctttttgaatagacttgctacaaaggacaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatg 586847  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| |||||||||||||    
T  586846 tggtaaggaggaggaaagggatcatttgttttttcaatg 586808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 27987627 - 27987675
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatct 225  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||    
T  27987627 tttttgtatggcgtctctttctgaatagacttgctacaaaggataatct 27987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 36575442 - 36575584
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || || |||||||||||||||||||||||||| |||||  | || || |||||| ||||||| ||   ||| | |||||  ||| | ||    
T  36575442 tttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatg 36575541  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgac 319  Q
    |||||||||||| ||||| || ||| ||||||| |||||||||    
T  36575542 tggtaaggaggaggaaagggatcatttgtttttccaatgcgac 36575584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 22865808 - 22865871
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| || | |||||||||||    
T  22865808 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgt 22865871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 18815464 - 18815502
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctg 226  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  18815464 cgtctctttctgaatagacttgctacaaaggataatctg 18815502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 24819859 - 24819717
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || || |||||||||||||||||||||||||| |||||  | || || || ||| ||||||| ||    || | |||||  ||||| ||    
T  24819859 tttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatg 24819760  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgac 319  Q
    |||||||||||| ||||| || ||| ||||||| |||||||||    
T  24819759 tggtaaggaggaggaaagggatcatttgtttttccaatgcgac 24819717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 12121748 - 12121607
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  | ||||  ||   ||| | |||||  ||||| ||    
T  12121748 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatg 12121649  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||  || ||| ||||||| ||||||||    
T  12121648 tggtaaggaggaggaaatggatcatttgtttttccaatgcga 12121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 27869060 - 27868999
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||| || |||||||||||||||||||||||||||||||| ||| || ||| ||| |||||    
T  27869060 tttgtttggcgtctctttctgaatagacttgctacaaaggataatttgcgcagaaggaatgt 27868999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 37075664 - 37075788
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||| |||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| ||||| |||||||| |    
T  37075664 ctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggagg 37075763  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| |||||||||||||    
T  37075764 aaagggatcatttgttttttcaatg 37075788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 5196787 - 5196732
Alignment:
Q  185 tgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||| |||||||| |||||||||||||||||||| ||| ||||||| ||| ||||    
T  5196787 tgacgactctttctaaatagacttgctacaaaggataatttgtgcaagagatatgt 5196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 8457244 - 8457307
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || |||||||||||||||||||||| |||||||||  ||||| | || ||||||||    
T  8457244 tttttgtctggcgtctctttctgaatagacttgatacaaaggattatctgcggaagagaaatgt 8457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 47549008 - 47548969
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaa 216  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  47549008 tttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 47553451 - 47553412
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaa 216  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  47553451 tttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 315
Target Start/End: Original strand, 9403205 - 9403323
Alignment:
Q  197 ctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatgaaagag 296  Q
    |||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| ||||| |    
T  9403205 ctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaggg 9403304  T
Q  297 accatatgttttttcaatg 315  Q
    | ||| ||||||| |||||    
T  9403305 atcatttgtttttccaatg 9403323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 38938634 - 38938496
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||  |||| || ||||||||| |||| |||  ||  | ||||||||| || ||    
T  38938634 tttttgtttggcgtctctttctgaatagacttactacaaaggacaatcttcgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatg 38938535  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| | |||||||||||    
T  38938534 tggtaaggaggaggaaagggaccatttattttttcaatg 38938496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 22300923 - 22300788
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtg 278  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||| || |||||||||||||| ||||  | ||  |||||   || ||| | |||||||    
T  22300923 tttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaagaaatgtccttgaccctacccttgtggcgtgcgcgaccttgtgtg 22300824  T
Q  279 gtaaggaggatgaaagagaccatatgttttttcaat 314  Q
    ||||| | || |||||||||||| ||||||||||||    
T  22300823 gtaagaaagaggaaagagaccatctgttttttcaat 22300788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 30276037 - 30275913
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||||||||||||| ||||||||||| |||||  |||| || |||||  ||||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  30276037 ctctttctgaatagactcgctacaaaggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagg 30275938  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    ||||||| ||| ||||||| |||||    
T  30275937 aaagagatcatttgtttttccaatg 30275913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 32350022 - 32349895
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||||||||||||||||||||||||| | |||  |||| || |||||  ||||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  32350022 ctctttctgaatagacttgctacaaaggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagg 32349923  T
Q  291 aaagagaccatatgttttttcaatgcga 318  Q
    |||| || ||| ||||||| ||||||||    
T  32349922 aaagggatcatttgtttttccaatgcga 32349895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 1258612 - 1258488
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggagg 287  Q
    ||||||||||||||||||||||||||||| || ||| |||| |||||||||| | ||||  | ||  || ||  ||| | | ||||||||||||| || |    
T  1258612 cgtctctttctgaatagacttgctacaaaagataatttgtgtaaaagaaatgcccttgaccctactcttatgccttgcgagactttgtgtggtaaagaag 1258513  T
Q  288 atgaaagagaccatatgttttttca 312  Q
    | ||||| |||||| ||||||||||    
T  1258512 aggaaagggaccatctgttttttca 1258488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 27914661 - 27914799
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| |||||  |||||||||||||||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | || ||  ||| | ||    
T  27914661 tttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggtgctatatg 27914760  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| ||||||| |||||    
T  27914761 tggtaaggaggaggaaagggatcatttgtttttccaatg 27914799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 21963556 - 21963436
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  21963556 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggagg 21963457  T
Q  291 aaagagaccatatgttttttc 311  Q
    |||  || ||| |||||||||    
T  21963456 aaaaggatcatttgttttttc 21963436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 21964741 - 21964639
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  21964741 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggagg 21964642  T
Q  291 aaa 293  Q
    |||    
T  21964641 aaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 23385005 - 23384867
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || |||||||||||||||| |||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| ||    
T  23385005 tttttgtttggcggctctttctgaatagacatgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatg 23384906  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||| ||||| ||||| || ||| |||| || |||||    
T  23384905 tggtaaagaggaggaaagtgatcatttgttcttccaatg 23384867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 74460 - 74322
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   ||| | ||||| ||| |||||    
T  74460 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtg 74361  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||  |||||| ||||||| |||||    
T  74360 tggtaaggaggaggaaatggaccatttgtttttccaatg 74322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 26077786 - 26077927
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||  ||||||| |||||  ||||||| ||   ||| | |||||  ||||| ||    
T  26077786 tttttgtttggcggctctttctgaatagacttgctacaaaggacaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatg 26077885  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  26077886 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 26077927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 29532519 - 29532455
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtc 241  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| |  ||||||| ||||||    
T  29532519 tttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaaggaatgtc 29532455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 10801740 - 10801803
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| |||| |||||||||||    
T  10801740 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgtgtaaaagaaatgt 10801803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 31423301 - 31423431
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| ||  |||| || || ||| |||| |  ||   ||| | ||| ||||| |||||    
T  31423301 tttttgtctgacgtctctttctgaatagacttgcaacaaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtg 31423400  T
Q  277 tggtaaggaggatgaaagagaccatatgttt 307  Q
    |||||||||||| ||||| |||||| |||||    
T  31423401 tggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 26390302 - 26390348
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaat 223  Q
    ||||||| || |||||||||||||||||||||||||||| |||||||    
T  26390302 tttttgtctggcgtctctttctgaatagacttgctacaacggacaat 26390348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 11225 - 11164
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||||| ||||||| |||||||||||| |||||||||| |||||| | || ||||||||    
T  11225 tttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagagaaatgt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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