View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0263_high_8 (Length: 291)

Name: NF0263_high_8
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0263_high_8
NF0263_high_8
[»] chr6 (2 HSPs)
chr6 (96-271)||(6633722-6633896)
chr6 (178-271)||(18626264-18626357)
[»] chr7 (8 HSPs)
chr7 (96-271)||(16301862-16302037)
chr7 (141-271)||(16252516-16252646)
chr7 (99-201)||(5057729-5057831)
chr7 (99-199)||(7228032-7228132)
chr7 (117-199)||(2478648-2478730)
chr7 (96-138)||(16249835-16249877)
chr7 (113-199)||(23103082-23103168)
chr7 (97-199)||(45956271-45956373)
[»] chr1 (7 HSPs)
chr1 (97-271)||(17595873-17596047)
chr1 (111-271)||(30747511-30747670)
chr1 (111-271)||(30768962-30769121)
chr1 (108-271)||(30746234-30746397)
chr1 (108-271)||(30767685-30767848)
chr1 (100-201)||(19883679-19883780)
chr1 (99-199)||(15243805-15243905)
[»] scaffold0004 (1 HSPs)
scaffold0004 (97-271)||(382444-382619)
[»] chr4 (9 HSPs)
chr4 (108-271)||(9196759-9196921)
chr4 (97-202)||(2328946-2329051)
chr4 (109-271)||(9219327-9219488)
chr4 (97-202)||(38811591-38811699)
chr4 (97-254)||(9246676-9246833)
chr4 (97-271)||(5066260-5066426)
chr4 (97-199)||(27304187-27304289)
chr4 (125-213)||(11489820-11489908)
chr4 (113-199)||(19943553-19943639)
[»] chr2 (5 HSPs)
chr2 (97-271)||(30969180-30969353)
chr2 (110-223)||(1762695-1762807)
chr2 (97-199)||(24927820-24927922)
chr2 (97-199)||(25677444-25677546)
chr2 (160-199)||(1762811-1762850)
[»] chr8 (4 HSPs)
chr8 (108-237)||(15258589-15258722)
chr8 (115-199)||(9243032-9243116)
chr8 (97-211)||(33349962-33350075)
chr8 (99-171)||(25988216-25988288)
[»] scaffold0135 (1 HSPs)
scaffold0135 (109-271)||(29978-30139)
[»] scaffold1952 (1 HSPs)
scaffold1952 (97-227)||(573-703)
[»] chr3 (4 HSPs)
chr3 (119-214)||(14148835-14148931)
chr3 (99-166)||(14073198-14073265)
chr3 (119-214)||(13608280-13608375)
chr3 (113-187)||(4288314-4288388)
[»] scaffold1826 (1 HSPs)
scaffold1826 (97-244)||(786-933)
[»] chr5 (2 HSPs)
chr5 (113-212)||(27892796-27892894)
chr5 (113-192)||(32578411-32578490)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 6633896 - 6633722
Alignment:
Q  96 gtgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtct 195  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||  |    
T  6633896 gtgataaccgaaaaataagttggttatcacgttgcacttagcccccataatggacaagtaattgaatgaatgcattgccttaaacatctaatcagtgctt 6633797  T
Q  196 attttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||| ||| ||||||  |||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||    
T  6633796 attttaggattttatagtcttaagtgtttttagtac-ttggaactagtaatgcttgtttatgatgtttgatgatgt 6633722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 18626264 - 18626357
Alignment:
Q  178 aacatctaatcagtgtctattttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||||||||||||||||||||| ||| | ||||| | |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  18626264 aacatctaatcagtgtctattttaggattttttagtttttagtgtttttagtactttggaactagtaatgcttgtttatgatgtttgatgatgt 18626357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 16302037 - 16301862
Alignment:
Q  96 gtgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtct 195  Q
    ||||||||||  |||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||  |    
T  16302037 gtgataaccggaaaataagtggtttatcacgttgcacttagcccccataatggacaagtaattgagtgattgcaatgccttaaacatataatcagtgcat 16301938  T
Q  196 attttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||| ||| ||  ||| |||||||||||| ||||||||||||||||||| |||||||| || |||||||||||    
T  16301937 attttaggattttaatgttttaagtgtttttagtactttggaactagtaatgcttgtttatgatatttgatgatgt 16301862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 271
Target Start/End: Original strand, 16252516 - 16252646
Alignment:
Q  141 catattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagttctaagtgtttttaatactttggaact 240  Q
    |||| |||| |||||||| |||||||||| | |||||||||||| ||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||    
T  16252516 cataatggaaaagtaatttagtgattgcaataccttaaacatcttatcagtgtctattttaggattttatagttttaagtatttttagtactttggaact 16252615  T
Q  241 agtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||  |||||||| || |||||||||||    
T  16252616 agtaattcttgtttatgatatttgatgatgt 16252646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 5057831 - 5057729
Alignment:
Q  99 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctatt 198  Q
    |||||||  ||||||||||||||||| ||||||||||||   |||| ||||||| ||||||||||||| || ||||| | |||||||||||||| |||||    
T  5057831 ataaccggtaaataagttggttatcacgttgcacttagctctcataatggacaaataattgagtgattacaatgcctaagacatctaatcagtgactatt 5057732  T
Q  199 tta 201  Q
    |||    
T  5057731 tta 5057729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 7228032 - 7228132
Alignment:
Q  99 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctatt 198  Q
    ||||||||||||  |||||||||||| ||||||||||||  | ||| || ||||| ||||||||||||| ||||||| | | |||||||||||| |||||    
T  7228032 ataaccgacaaaatagttggttatcacgttgcacttagctcctataatgaacaagaaattgagtgattgaattgcctaagagatctaatcagtgcctatt 7228131  T
Q  199 t 199  Q
    |    
T  7228132 t 7228132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 2478730 - 2478648
Alignment:
Q  117 ggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 199  Q
    ||||||||||||||||||| || ||||| || ||||| |||| ||||| |||||  ||| |||||||||||||||| ||||||    
T  2478730 ggttatcatgttgcacttatcccccataatgaacaagaaattaagtgaatgcatgacctaaaacatctaatcagtgactattt 2478648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 16249835 - 16249877
Alignment:
Q  96 gtgataaccgacaaataagttggttatcatgttgcacttagcc 138  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  16249835 gtgataaccggcaaataagttggttatcacgttgcacttagcc 16249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 23103082 - 23103168
Alignment:
Q  113 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 199  Q
    ||||||||||||||||||||||| || ||||| |  ||||| || ||||||| |||| || || || |||||||| |||| ||||||    
T  23103082 agttggttatcatgttgcacttatcccccataattaacaagaaaatgagtgaatgcaatgtctaaagcatctaattagtgcctattt 23103168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 45956271 - 45956373
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||||| ||||  |||||||||||| |||||| ||| | |||||| || ||| | |||||||||||| ||||| || | |||| | ||| |||||||    
T  45956271 tgataaccggcaaaatagttggttatcacgttgcatttaacttccataatgaacacgaaattgagtgattacattgtctaagacatttgatcggtgtcta 45956370  T
Q  197 ttt 199  Q
    |||    
T  45956371 ttt 45956373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 17595873 - 17596047
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    |||||||| ||||||||||||||||||| |||||| | | ||   ||||| ||| ||| |||||||||||| |||||||| ||||||||| || ||||||    
T  17595873 tgataaccaacaaataagttggttatcacgttgcattcaacccttatatttgactagttattgagtgattgtattgccttcaacatctaaacaatgtcta 17595972  T
Q  197 ttttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    |||||| ||| ||||||| ||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  17595973 ttttaggattttatagttttaaatgtttttagtactttggaactagtaatgcttgtttatgatgtttgatgatgt 17596047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 30747511 - 30747670
Alignment:
Q  111 taagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatat 210  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||| ||||||||||| |  |||||||||||||||| |||||||||||  ||| |||    
T  30747511 taagttggttatcatgttacacttagcccctatatag-acaagtaatcgagtgattgcaatttcttaaacatctaatcactgtctattttaagattttat 30747609  T
Q  211 agttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    |||| ||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  30747610 agttttaaatgtttttattactttggaactagtaatgcttgtttattatgtttgatgatgt 30747670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 30768962 - 30769121
Alignment:
Q  111 taagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatat 210  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||| ||||||||||| |  |||||||||||||||| |||||||||||  ||| |||    
T  30768962 taagttggttatcatgttacacttagcccctatatag-acaagtaatcgagtgattgcaatttcttaaacatctaatcactgtctattttaagattttat 30769060  T
Q  211 agttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    |||| ||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  30769061 agttttaaatgtttttattactttggaactagtaatgcttgtttattatgtttgatgatgt 30769121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 30746234 - 30746397
Alignment:
Q  108 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtatta 207  Q
    |||||||||||||||||  || || |||||| | ||| | || ||||||| || |||||||| || ||||||||| |||||| |||||||||||| |||     
T  30746234 aaataagttggttatcacattccagttagcccctataatagataagtaatggaatgattgcaatgtcttaaacatttaatcaatgtctattttaggattt 30746333  T
Q  208 tatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||| ||| | |||||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  30746334 tatagttttaaatatttttagtactttgaaactagtaatgcttgtttatgatgtttgatgatgt 30746397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 30767685 - 30767848
Alignment:
Q  108 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtatta 207  Q
    |||||||||||||||||  || || |||||| | ||| | || ||||||| || |||||||| || ||||||||| |||||| |||||||||||| |||     
T  30767685 aaataagttggttatcacattccagttagcccctataatagataagtaatggaatgattgcaatgtcttaaacatttaatcaatgtctattttaggattt 30767784  T
Q  208 tatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||| ||| | |||||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  30767785 tatagttttaaatatttttagtactttgaaactagtaatgcttgtttatgatgtttgatgatgt 30767848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 19883780 - 19883679
Alignment:
Q  100 taaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 199  Q
    ||||||| || | |||||||||||| |||||||||| |  |||||  ||||||| ||| ||||||||||||||| | | |||||||||||||| ||||||    
T  19883780 taaccgaaaatttagttggttatcacgttgcacttaactcccataagggacaagaaatcgagtgattgcattgcttaagacatctaatcagtgactattt 19883681  T
Q  200 ta 201  Q
    ||    
T  19883680 ta 19883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 15243805 - 15243905
Alignment:
Q  99 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctatt 198  Q
    |||||| ||||||  || |||||||||||| |||||| || ||||| || ||||| |||||||||| |||||  ||| |||||||||||||||| |||||    
T  15243805 ataaccaacaaatttgtaggttatcatgttacacttatcccccataatgaacaagaaattgagtgaatgcatgacctaaaacatctaatcagtgactatt 15243904  T
Q  199 t 199  Q
    |    
T  15243905 t 15243905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 382444 - 382619
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||||| ||||| ||||||||||||||||||||| | || | |||||||||||||  |||||||||||||||| ||| |||||||||| ||||||||    
T  382444 tgataaccggcaaatcagttggttatcatgttgcactaaacccctatattggacaagttgttgagtgattgcattgtctttaacatctaattagtgtcta 382543  T
Q  197 ttttagta-ttatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    |||||| | || ||||||| || ||| ||||| ||||||||||||||||||| || |||||  |||||||||||||    
T  382544 ttttaggatttttatagttttatgtgcttttagtactttggaactagtaatgcttatttatgttgtttgatgatgt 382619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 9196759 - 9196921
Alignment:
Q  108 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtatta 207  Q
    |||||| ||| |||||| |||||||||| |    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||| |||     
T  9196759 aaataaattgattatcacgttgcacttaactgttatattggacaagtaattgagtgattgcattgcctttaacatctaatctgtgttta-tttaggattt 9196857  T
Q  208 tatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||    
T  9196858 tatagttttaagtgtttttagtactttggaactagtaatgcttgtttatcatgtttaatgatgt 9196921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 2329051 - 2328946
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||  | ||||||||||||||||||||| ||||||||||||||||||| || |||    
T  2329051 tgataaccgacaaataagttggttatcacgttgcacttagcccacataacgtacaagtaattgagtgattgcaatgccttaaacatctaatcattgccta 2328952  T
Q  197 ttttag 202  Q
    ||||||    
T  2328951 ttttag 2328946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 9219327 - 9219488
Alignment:
Q  109 aataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattat 208  Q
    ||||| ||||||| || |||||||||| |    ||||||||||||||||| |||||||||| ||| |||| ||||||||  |||| |||||||| ||| |    
T  9219327 aataaattggttaccacgttgcacttaactcttatattggacaagtaatttagtgattgcagtgctttaa-catctaatatgtgtttattttagaatttt 9219425  T
Q  209 atagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||  || |||||||||||| || |||||||||||||||| |||||||| ||||||||||||||    
T  9219426 atgcttttaagtgtttttagtattttggaactagtaatgcttgtttatgatgtttgatgatgt 9219488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 38811591 - 38811699
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtg---attgcattgccttaaacatctaatcagtgt 193  Q
    ||||||||| | |||||||||||||||| ||||||||||||| || || ||||||||||||||||||   ||||||||| |||||||||||||||||||     
T  38811591 tgataaccggctaataagttggttatcacgttgcacttagcccccgtaatggacaagtaattgagtgattattgcattgtcttaaacatctaatcagtgc 38811690  T
Q  194 ctattttag 202  Q
    |||||||||    
T  38811691 ctattttag 38811699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 254
Target Start/End: Original strand, 9246676 - 9246833
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    |||||||||  |||||| ||||||||||  ||||||||| |    ||||||||||||||| ||||||||||||||| ||| |||||||||||  ||  ||    
T  9246676 tgataaccggtaaataaattggttatcagattgcacttaactcttatattggacaagtaactgagtgattgcattgtctttaacatctaatctatgctta 9246775  T
Q  197 ttttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgttt 254  Q
     ||||| ||| || |||| |||||||||||| ||||||| ||||||||||| ||||||    
T  9246776 gtttaggattttaaagttttaagtgtttttagtactttgaaactagtaatgcttgttt 9246833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 5066260 - 5066426
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||| || ||||||||| ||||||| |||||||||| || ||||| |||||| ||        ||||| | ||||||||| || |||| ||||  ||    
T  5066260 tgataactgaaaaataagttagttatcacgttgcacttaacccccataatggacaggt--------gattgtaatgccttaaaaatttaattagtgcata 5066351  T
Q  197 ttttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    |||||| ||| ||||||| |||||||||||  ||||||||||||||||||| |||||| | ||||||||||||||    
T  5066352 ttttaggattttatagttttaagtgttttttgtactttggaactagtaatgcttgtttgtgatgtttgatgatgt 5066426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 27304187 - 27304289
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||| ||||||  ||||| |||||||||||||||||||  ||||| |||| ||| ||||||||||||||||||||| | || |||||| |||| |||    
T  27304187 tgataactgacaaaatagttgattatcatgttgcacttagctcccataatggataagaaattgagtgattgcattgcctgagacgtctaattagtgccta 27304286  T
Q  197 ttt 199  Q
    |||    
T  27304287 ttt 27304289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 11489908 - 11489820
Alignment:
Q  125 tgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagt 213  Q
    |||||||||||||| | ||| ||||||  ||||||||||||| || ||||| ||| ||||||||| |||||||||||| ||| ||||||    
T  11489908 tgttgcacttagcccctataatggacatataattgagtgatttcaatgcctcaaatatctaatcattgtctattttaggattttatagt 11489820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 19943639 - 19943553
Alignment:
Q  113 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 199  Q
    ||||||||||||||||||||||| |  ||||| || || || |||||||| | |||||  ||| |||||| ||||||||||||||||    
T  19943639 agttggttatcatgttgcacttatctcccataatgaacgaggaattgagtaaatgcatgacctaaaacatataatcagtgtctattt 19943553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 30969180 - 30969353
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    |||||||| | ||||||||||||||||| ||||||||||||| | ||| |||| |||||||||| |||||||| || |||| ||||||||||| || |||    
T  30969180 tgataaccaagaaataagttggttatcacgttgcacttagcccctataatggataagtaattgaatgattgcaatgtcttacacatctaatcaatgccta 30969279  T
Q  197 ttttagtattatatagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    |||||| ||| ||||| | |||||| ||||| |||||||||| |||||||  |||||||| ||||||||||||||    
T  30969280 ttttagaatt-tatagctttaagtggttttagtactttggaattagtaatacttgtttatgatgtttgatgatgt 30969353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 1762695 - 1762807
Alignment:
Q  110 ataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattata 209  Q
    ||||||| ||||||| |||||||||  || | ||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||  ||| |     
T  1762695 ataagttagttatcacgttgcacttgacccctatattggacaaataat-gagtgattgcattgcctttaacatctaatcggtgtctattttaagattttt 1762793  T
Q  210 tagttctaagtgtt 223  Q
    ||||| ||||||||    
T  1762794 tagttttaagtgtt 1762807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 24927820 - 24927922
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||||| ||||  |||||||||||||||||||||||||  |  || || ||| | |||||||||||| |||| ||| | |||||||||| ||| |||    
T  24927820 tgataaccggcaaaatagttggttatcatgttgcacttagctcctgtaatgaacaggaaattgagtgatttcattacctaagacatctaatcggtgccta 24927919  T
Q  197 ttt 199  Q
    |||    
T  24927920 ttt 24927922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 25677444 - 25677546
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||||| ||||   |||||||||||||||||||||| |  | ||| || ||||| |||||||||||| |||| ||| | |||||||||| ||| |||    
T  25677444 tgataaccggcaaaattgttggttatcatgttgcacttaactcctataatgaacaagaaattgagtgatttcattacctaagacatctaatcggtgccta 25677543  T
Q  197 ttt 199  Q
    |||    
T  25677544 ttt 25677546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 1762811 - 1762850
Alignment:
Q  160 agtgattgcattgccttaaacatctaatcagtgtctattt 199  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  1762811 agtgattgcattgcctttaacatctaatcggtgtctattt 1762850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 15258722 - 15258589
Alignment:
Q  108 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaaca----tctaatcagtgtctattttagt 203  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||| |||||  |    | |||||||||||||||||||     
T  15258722 aaataagttggttatcacattgcacttagcccccatattggacaagtatttgagtgattgcattgacttaagtaatagtttaatcagtgtctattttagg 15258623  T
Q  204 attatatagttctaagtgtttttaatactttgga 237  Q
    ||| ||||||| ||||| |||||| |||||||||    
T  15258622 attttatagttttaagtatttttagtactttgga 15258589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 9243116 - 9243032
Alignment:
Q  115 ttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 199  Q
    |||||||| |||||||||||| || ||||| |||||||| |||| |||||||| ||||||| | |||| |||||| |||||||||    
T  9243116 ttggttatgatgttgcacttaacccccataatggacaagaaatttagtgattgaattgcctaagacatttaatcaatgtctattt 9243032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 33350075 - 33349962
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    ||||||| | ||||| ||||||||||||  |||||||||||   |||| |||||||| |||| ||||||||||||| || | |||||| |||| || |||    
T  33350075 tgataactggcaaattagttggttatcacattgcacttagctctcataatggacaagaaattaagtgattgcattggctaagacatcttatca-tgacta 33349977  T
Q  197 ttttagtattatata 211  Q
    |||||| ||| ||||    
T  33349976 ttttaggattttata 33349962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 25988216 - 25988288
Alignment:
Q  99 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcatt 171  Q
    ||||||| ||||  |||| ||||||| |||||||||||| | |||| || ||||| |||||||||| ||||||    
T  25988216 ataaccggcaaaatagtttgttatcacgttgcacttagctttcataatgaacaagaaattgagtgaatgcatt 25988288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 29978 - 30139
Alignment:
Q  109 aataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattat 208  Q
    ||||| ||||||| || |||||||||| |    ||||||||||||||||| |||||||||| ||| |||| ||||||||  |||| |||||||| ||| |    
T  29978 aataaattggttaccacgttgcacttaactcttatattggacaagtaatttagtgattgcagtgctttaa-catctaatatgtgtttattttagaatttt 30076  T
Q  209 atagttctaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 271  Q
    ||  || |||||||||||| || |||||||||||||||| |||||||| ||||||||||||||    
T  30077 atgcttttaagtgtttttagtattttggaactagtaatgcttgtttatgatgtttgatgatgt 30139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1952 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1952
Description:

Target: scaffold1952; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 573 - 703
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    |||||||||  |||||| ||||||| |||||||| |||| |    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||    
T  573 tgataaccggtaaataacttggttaccatgttgcgcttaactcttatattggacaagtaattgagtgattgcattgcctttaacatctaatctgtgttta 672  T
Q  197 ttttagtattatatagttctaagtgttttta 227  Q
    |||||| ||| ||| ||| ||||||| ||||    
T  673 ttttaggattttatggttttaagtgtgttta 703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 14148931 - 14148835
Alignment:
Q  119 ttatcatgttgcacttagcc-tccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagtt 214  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||| || | ||||||||||||||||| |||| ||||||||  ||| |||||||    
T  14148931 ttatcaagttgcacttagccctccataatggacaagtaattgagtgaatgtaatgccttaaacatctaattagtgcctattttaagattttatagtt 14148835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 14073265 - 14073198
Alignment:
Q  99 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgatt 166  Q
    |||||||  ||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||    
T  14073265 ataaccggaaaataagttggttatcacgttgcacttagcccccataatggacaagtaattaagtgatt 14073198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 13608375 - 13608280
Alignment:
Q  119 ttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagtt 214  Q
    ||||||||||||| | |||| ||||| | ||| ||||||| |||||||| | | |||||| ||||||||||||| ||||||||  ||| |||||||    
T  13608375 ttatcatgttgcaataagcccccataatagactagtaattaagtgattgtaattccttaatcatctaatcagtgcctattttaagattttatagtt 13608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 4288388 - 4288314
Alignment:
Q  113 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaat 187  Q
    |||||||||||| |||||||||| |  ||||| || ||||| || ||||||| |||||||||| || ||||||||    
T  4288388 agttggttatcacgttgcacttatctcccataatgaacaagaaactgagtgaatgcattgcctaaagcatctaat 4288314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 786 - 933
Alignment:
Q  97 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 196  Q
    |||||||||  |||||| ||| |||||| |||||||||  |    ||| ||||||||||||||||||||||||||| ||| |||||||||||  ||  ||    
T  786 tgataaccggtaaataaattgattatcaggttgcactttactcttatagtggacaagtaattgagtgattgcattgtctttaacatctaatctatgctta 885  T
Q  197 ttttagtattatatagttctaagtgtttttaatactttggaactagta 244  Q
     ||||| ||| || |||| |||||||||||| ||||||||||| ||||    
T  886 gtttaggattttaaagttttaagtgtttttagtactttggaacaagta 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 27892796 - 27892894
Alignment:
Q  113 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatag 212  Q
    |||||||||||| |||||||||| |    ||| |||||||| |||||| |||| ||||||||| | | ||||||| |||||||| ||||||||| |||||    
T  27892796 agttggttatcacgttgcacttaactctaataatggacaagaaattgattgatcgcattgcctaagatatctaataagtgtcta-tttagtattttatag 27892894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 32578411 - 32578490
Alignment:
Q  113 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtg 192  Q
    |||||||||||| ||||||||||||  ||||| |||  ||  ||||||||||||||||||||| | ||||| ||| ||||    
T  32578411 agttggttatcacgttgcacttagctcccataatgggtaaagaattgagtgattgcattgcctaagacatcaaataagtg 32578490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 212 times since January 2019
Visitors: 2563