View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0263_low_10 (Length: 319)
Name: NF0263_low_10
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 5889064 - 5888976
Alignment:
| Q |
28 |
gctgttgctgcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcaca |
116 |
Q |
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| T |
5889064 |
gctgttgctgcatcgaagcaagtagaaaagacggttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcaca |
5888976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 27940061 - 27940152
Alignment:
| Q |
131 |
actgtgcaaaaaagctacttgaatgaagatgttagagaaggatattttgcagtggttgcaatcaaagatggagaaatgaaaaggtttatgat |
222 |
Q |
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| T |
27940061 |
actgttcaaaaaagccacttgaatgaagatgttagagaaggatattttgcagtggttgcaatcaaagatggagaaatgaaaaggtttatgat |
27940152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 27956174 - 27956238
Alignment:
| Q |
155 |
gaagatgttagagaaggatattttgcagtggttgcaatcaaagatggagaaatgaaaaggtttat |
219 |
Q |
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| T |
27956174 |
gaagatgttagggaaggatactttgctgttgttgcaatgaaggatggagaaactaaaaggtttat |
27956238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 27959359 - 27959423
Alignment:
| Q |
155 |
gaagatgttagagaaggatattttgcagtggttgcaatcaaagatggagaaatgaaaaggtttat |
219 |
Q |
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| T |
27959359 |
gaagatgttagggaaggatactttgctgtcgttgcaatgaaagatggagaaaccaaaaagtttat |
27959423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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