View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0263_low_18 (Length: 278)
Name: NF0263_low_18
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3959333 - 3959541
Alignment:
| Q |
1 |
tgctggaatgctgactaaattttgatactctgttgaggtgtcatctctgttattctcagtaaataaactgtcatcaataggactggagtgaggtgcagct |
100 |
Q |
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| T |
3959333 |
tgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctgttattatcagtaaataaactgtcatcaacaggactggagtgaggtgcagct |
3959432 |
T |
|
| Q |
101 |
cccttttgcagaatgaaacacaacaaagtttaactcagaggcatggtttataatactggttgtgtctttagttccctcgttttctatgttcccattttga |
200 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3959433 |
cccttttgctgaatgagacacaacaaagtttaactcagaggcatggtttataatactggttgtgtctttagttccctccttttctatgttcccattttga |
3959532 |
T |
|
| Q |
201 |
ggtaaactg |
209 |
Q |
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||||||||| |
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| T |
3959533 |
ggtaaactg |
3959541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 3959779 - 3959843
Alignment:
| Q |
208 |
tggtacatatatatgccctttatcgttggtgaaacttatatagtaaatatatcccttcttttctg |
272 |
Q |
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| T |
3959779 |
tggtacatatatatgccctttatcgttggtgaaacttatatagtaaatatatcccttcttttctg |
3959843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 19167855 - 19167758
Alignment:
| Q |
10 |
gctgactaaattttgatactctgttgaggtgtcatctctgttattctcagtaaataaactgtcatcaataggactggagtgaggtgcagctccctttt |
107 |
Q |
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||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||| |
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| T |
19167855 |
gctgactaaatttagatactctgttaaactgtcatctctgttattctcagtaaataaactgtcatcaacaagattggagtgaggtgcaactccctttt |
19167758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 19167705 - 19167640
Alignment:
| Q |
145 |
ggtttataatactggttgtgtctttagttccctcgttttctatgttccc-attttgaggtaaactg |
209 |
Q |
| |
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||||||||||| ||||||||||||||||||| || ||||| ||||||| ||||||| |||||||| |
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| T |
19167705 |
ggtttataatattggttgtgtctttagttccttccatttctttgttcccaattttgaagtaaactg |
19167640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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