View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0263_low_2 (Length: 507)
Name: NF0263_low_2
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 34685163 - 34685383
Alignment:
| Q |
30 |
cttctttctcttccattgatcatgcactactcctttttctccgcagtac----acacacatatgcgcgtgtagaacaagcagttttctttgttgtgtaat |
125 |
Q |
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| T |
34685163 |
cttctttctcttccattgatcatgcactactcctttttctccgcagtacgtacacacacgtatgcgcatgtagaacaagcagttttctttgttgtgtaat |
34685262 |
T |
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| Q |
126 |
aaaataaatttaagttaggtcagttggtagcaacagtgcataatatatgtaaaatctaggttcaaacctccacggctnnnnnnnnntataaaataaccgg |
225 |
Q |
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| T |
34685263 |
aaaacaaatttaagttaggtcaattggtagcaacaatgcataatatatgcaaaatataggttcaaacc-ccacgactac--------aaaaaataaccgg |
34685353 |
T |
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| Q |
226 |
tgtaagtaaagctggcaaacatggttcttg |
255 |
Q |
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| T |
34685354 |
tgtaagtaaagctggcaaacatggttcttg |
34685383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 365 - 493
Target Start/End: Original strand, 34685492 - 34685620
Alignment:
| Q |
365 |
cccttctatgtgcaagcgtttcattaaataggaggccacattttccatcaaaataatctgaagaaagaactttgcacttgaaattacatcatcttccatt |
464 |
Q |
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| T |
34685492 |
cccttctatgtgcaagcgtttcattaaataggaggccacattttccatcaaaataatctgaagaaagaactttgcacttgaaattacatcatcttccatt |
34685591 |
T |
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| Q |
465 |
acttactactactatatatttcttctctt |
493 |
Q |
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| T |
34685592 |
acttactactactatatatttcttctctt |
34685620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 34693299 - 34693372
Alignment:
| Q |
382 |
gtttcattaaataggaggccacattttccatcaaaataatctgaagaaagaactttgcacttgaaattacatca |
455 |
Q |
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| T |
34693299 |
gttttattaaataggatgccacatttttcgtcaagataacctgaagaaagaactttgcaattgaaattacatca |
34693372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 34693388 - 34693438
Alignment:
| Q |
441 |
cttgaaattacatcatcttccattacttactactactatatatttcttctc |
491 |
Q |
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| T |
34693388 |
cttgcaattacatcatcttccattacttactactattatatatttcttctc |
34693438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 44110956 - 44111010
Alignment:
| Q |
140 |
ttaggtcagttggtagcaacagtgcataatatatgtaaaatcta-ggttcaaacc |
193 |
Q |
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| T |
44110956 |
ttagctcagttggtaggaacagtgcatagtatatgtaaagtctagggttcaaacc |
44111010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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