View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0263_low_21 (Length: 250)

Name: NF0263_low_21
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0263_low_21
NF0263_low_21
[»] chr6 (25 HSPs)
chr6 (1-214)||(14017003-14017213)
chr6 (27-214)||(14112428-14112609)
chr6 (56-217)||(14027049-14027204)
chr6 (27-217)||(14026948-14027132)
chr6 (103-218)||(13890940-13891052)
chr6 (131-221)||(14017058-14017148)
chr6 (56-221)||(13873144-13873303)
chr6 (28-139)||(13942996-13943104)
chr6 (27-147)||(13470999-13471116)
chr6 (27-142)||(13860954-13861066)
chr6 (60-217)||(13873076-13873227)
chr6 (17-221)||(13873216-13873414)
chr6 (27-142)||(14086616-14086728)
chr6 (103-214)||(13470863-13470971)
chr6 (56-143)||(13890940-13891024)
chr6 (131-217)||(13860954-13861037)
chr6 (56-139)||(13470863-13470943)
chr6 (131-214)||(13943024-13943104)
chr6 (131-221)||(13471000-13471087)
chr6 (131-221)||(14112457-14112544)
chr6 (131-217)||(14086645-14086728)
chr6 (178-221)||(13891009-13891052)
chr6 (178-221)||(14027021-14027064)
chr6 (56-142)||(13873076-13873159)
chr6 (34-66)||(13891086-13891118)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 14017003 - 14017213
Alignment:
Q  1 tagaaatctaaaattgtatcctcattcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtgg 100  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  14017003 tagaaatctaaaaacgtatcctccttcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaattcttccttccaaaccaatgttgtgg 14017102  T
Q  101 ctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | || |||   ||||||||||||||||||||||||    
T  14017103 ctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccatccaaatcattggtgt---tgagatcaagaaattgcaagttgg 14017199  T
Q  201 agagatttccaagt 214  Q
    |||||| |||||||    
T  14017200 agagatctccaagt 14017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 14112428 - 14112609
Alignment:
Q  27 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 126  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |   |||  |||||||||||||||||||||||||||    
T  14112428 caagataaagctcttgtagatttgtaagctttccaatttgagatggaatgcttccttcaaaacca---ttgatgctgagatcaagaaattgcaagttgga 14112524  T
Q  127 gagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 214  Q
     ||||||||||||||||||||||||||||||||||||| | | ||||   |||||||||||||||||||||||||||||| |||||||    
T  14112525 aagatttccaagttgagatggaatgcttccttccaaaccattattgt---tgagatcaagaaattgcaagttggagagatctccaagt 14112609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 14027049 - 14027204
Alignment:
Q  56 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttc 155  Q
    |||||||||||||||||||||||||||||||||  | || ||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14027049 tttccaagttgagatggaatgcttccttccaaataattgatg---ctgagatcaagaaattgcaagttggagagatttccaagttgacatggaatgcttc 14027145  T
Q  156 cttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 217  Q
    ||||||||  |   ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  14027146 cttccaaataa---ttgtggctgagatcaagaaattgcaagttggagagacctccaagttga 14027204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 14026948 - 14027132
Alignment:
Q  27 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |   ||||||  |||  | |    |||   |||||||||||||||||||||||    
T  14026948 caagataaagctcttgtaggtttgtaagctttccaagttgagatggtaattttcctttaaaaaaatttccatgg---agatcaagaaattgcaagttgga 14027044  T
Q  127 gagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 217  Q
    |||||||||||||||||||||||||||||||||||||  |   |||  |||||||||||||||||||||||||||||||||||||||||||    
T  14027045 gagatttccaagttgagatggaatgcttccttccaaataa---ttgatgctgagatcaagaaattgcaagttggagagatttccaagttga 14027132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 13891052 - 13890940
Alignment:
Q  103 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaaaga---ttgcggctaagatcaagaaattgcaagttggag 13890956  T
Q  203 agatttccaagttgag 218  Q
    ||||||||||||||||    
T  13890955 agatttccaagttgag 13890940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14017058 - 14017148
Alignment:
Q  131 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 221  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14017058 tttccaagttgagatggaattcttccttccaaaccaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 14017148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 13873303 - 13873144
Alignment:
Q  56 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttc 155  Q
    ||||||||||| |||||||| ||||||||||||  | |||| |   |||||| |||||||| |||||||||||||||| ||||||| ||||| |||||||    
T  13873303 tttccaagttgggatggaatccttccttccaaatcattgtttt---tgagatgaagaaatttcaagttggagagattttcaagttgggatggtatgcttc 13873207  T
Q  156 cttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 221  Q
    |||||||||||   |||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  13873206 cttccaaacga---ttgtagctgagatcaagaaattgcaagttggagagatttccgagtttagatg 13873144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 13942996 - 13943104
Alignment:
Q  28 aagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggag 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |   |||| ||||||||||||||||||||||||||||    
T  13942996 aagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttggag 13943092  T
Q  128 agatttccaagt 139  Q
    |||| |||||||    
T  13943093 agatctccaagt 13943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 13471116 - 13470999
Alignment:
Q  27 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 126  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||   | | || | |||||||||||||||||||||||||||    
T  13471116 caagataaagcttttgtaggtttgtaagctttccaagttgagatggaatatttccttccaa---attattatagctgagatcaagaaattgcaagttgga 13471020  T
Q  127 gagatttccaagttgagatgg 147  Q
    |||||||||||||||||||||    
T  13471019 gagatttccaagttgagatgg 13470999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 13861066 - 13860954
Alignment:
Q  27 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 126  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||    
T  13861066 caagataaagctcttgtaggttcacaagctttccaagttgagatggaatgcttccttccaaaaaa---ttgtagctgagatcaagaaattgcaagttgga 13860970  T
Q  127 gagatttccaagttga 142  Q
    ||||| ||||||||||    
T  13860969 gagatctccaagttga 13860954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 13873227 - 13873076
Alignment:
Q  60 caagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttc 159  Q
    ||||||| ||||| ||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  13873227 caagttgggatggtatgcttccttccaaacga---ttgtagctgagatcaagaaattgcaagttggagagatttccgagtttagatggaatgcttccttc 13873131  T
Q  160 caaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 217  Q
     ||| ||   |||| ||| ||||||| |||| | |  |||||||||||||||||||||    
T  13873130 taaatga---ttgttgcttagatcaataaatcgaacattggagagatttccaagttga 13873076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 13873414 - 13873216
Alignment:
Q  17 tatcctcattcaagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaatt 116  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||||| |||| ||  ||||||  ||| |||| |       ||||||||||||||    
T  13873414 tatcctcctccaagataaagatcttgtaggtttgtaagctttccaagttgatatggtatttttccttttaaa-gaatttccaaa--gagatcaagaaatt 13873318  T
Q  117 gcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttg 216  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||  | |||| |   |||||| |||||||| |||||||||||||||| |||||||    
T  13873317 gcaagttggagagatttccaagttgggatggaatccttccttccaaatcattgtttt---tgagatgaagaaatttcaagttggagagattttcaagttg 13873221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 14086616 - 14086728
Alignment:
Q  27 caagataaagctcttgtaggtttgtaagctttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttgga 126  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||   |   |||| |||||||||||||||||||||||||||    
T  14086616 caagataaagctcttgtaggttcgtaagctttccaagttgatatggaatacttccttccaagtca---ttgttgctgagatcaagaaattgcaagttgga 14086712  T
Q  127 gagatttccaagttga 142  Q
    ||||| ||||||||||    
T  14086713 gagatctccaagttga 14086728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 13470971 - 13470863
Alignment:
Q  103 gagatcaagaaattgcaagttggagagatttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggag 202  Q
    |||||||||| ||| || || | |||||||||||||||||| ||||||||||||||||||||||   ||||  |||||||||||||||||||||||||||    
T  13470971 gagatcaagatattccatgtcgaagagatttccaagttgagttggaatgcttccttccaaacga---ttgttcctgagatcaagaaattgcaagttggag 13470875  T
Q  203 agatttccaagt 214  Q
    |||| |||||||    
T  13470874 agatctccaagt 13470863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 13891024 - 13890940
Alignment:
Q  56 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgag 143  Q
    ||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  13891024 tttccaagttgagatggaatgcttccttccaaaaga---ttgcggctaagatcaagaaattgcaagttggagagatttccaagttgag 13890940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 13861037 - 13860954
Alignment:
Q  131 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 217  Q
    |||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13861037 tttccaagttgagatggaatgcttccttccaaaaaa---ttgtagctgagatcaagaaattgcaagttggagagatctccaagttga 13860954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 13470943 - 13470863
Alignment:
Q  56 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 139  Q
    ||||||||||||| |||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||| |||||||    
T  13470943 tttccaagttgagttggaatgcttccttccaaacgattgttc---ctgagatcaagaaattgcaagttggagagatctccaagt 13470863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 13943024 - 13943104
Alignment:
Q  131 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagt 214  Q
    |||||||||||||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||||| |||||||    
T  13943024 tttccaagttgagatggaatgcttccttccaaataa---ttgttgctgagatcaagaaattgcaagttggagagatctccaagt 13943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 13471087 - 13471000
Alignment:
Q  131 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 221  Q
    ||||||||||||||||||||  |||||||||||  |   || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  13471087 tttccaagttgagatggaatatttccttccaaatta---ttatagctgagatcaagaaattgcaagttggagagatttccaagttgagatg 13471000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14112457 - 14112544
Alignment:
Q  131 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttgagatg 221  Q
    ||||||| ||||||||||||||||||||| |||| | || ||   |||||||||||||||||||||||||| |||||||||||||||||||    
T  14112457 tttccaatttgagatggaatgcttccttcaaaaccattgatg---ctgagatcaagaaattgcaagttggaaagatttccaagttgagatg 14112544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 14086645 - 14086728
Alignment:
Q  131 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 217  Q
    |||||||||||| ||||||| |||||||||||   | |||||   ||||||||||||||||||||||||||||||| ||||||||||    
T  14086645 tttccaagttgatatggaatacttccttccaagtcattgttg---ctgagatcaagaaattgcaagttggagagatctccaagttga 14086728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 13891052 - 13891009
Alignment:
Q  178 gagatcaagaaattgcaagttggagagatttccaagttgagatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13891052 gagatcaagaaattgcaagttggagagatttccaagttgagatg 13891009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 14027021 - 14027064
Alignment:
Q  178 gagatcaagaaattgcaagttggagagatttccaagttgagatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14027021 gagatcaagaaattgcaagttggagagatttccaagttgagatg 14027064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 13873159 - 13873076
Alignment:
Q  56 tttccaagttgagatggaatgcttccttccaaacgaatgttgtggctgagatcaagaaattgcaagttggagagatttccaagttga 142  Q
    ||||| |||| |||||||||||||||||| ||| ||   |||| ||| ||||||| |||| | |  |||||||||||||||||||||    
T  13873159 tttccgagtttagatggaatgcttccttctaaatga---ttgttgcttagatcaataaatcgaacattggagagatttccaagttga 13873076  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 13891118 - 13891086
Alignment:
Q  34 aagctcttgtaggtttgtaagctttccaagttg 66  Q
    ||||||||||||||| |||||||||||||||||    
T  13891118 aagctcttgtaggttggtaagctttccaagttg 13891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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