View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0263_low_3 (Length: 415)
Name: NF0263_low_3
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0263_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 5401099 - 5400950
Alignment:
| Q |
30 |
gaccaaacaatgtcttggtgtgaataatagacgagctgccactactacaatattaaccacgcacaaagtcaccatgatgatcaggaatgagaattccaaa |
129 |
Q |
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| T |
5401099 |
gaccaaacaaagtcttggtgtgaataatagacgagctgccactactacaatattaaccacgcacaaagtcaccatgatgatcaggaatgagaattccaaa |
5401000 |
T |
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| Q |
130 |
ccctctgtaccaacgctaaaaaagacactaccatccacattcaaaacaac |
179 |
Q |
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| T |
5400999 |
ccctctgtaccaacgctaaaaaagacactacaatccacattcaaaacaac |
5400950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 5335555 - 5335433
Alignment:
| Q |
42 |
tcttggtgtgaataatagacgagctgccactactacaatattaaccacgcacaaagtcaccatgatgatcaggaatgagaattccaaaccctctgtacca |
141 |
Q |
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| T |
5335555 |
tcttggcgtgaataatagacgagtcgccattacaacaataataaccatgcagaaagtcgccatgatgatcacaaatgagacctccaaactc-ccgtacca |
5335457 |
T |
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| Q |
142 |
acgctaaaaaagacactaccatcc |
165 |
Q |
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||| || ||||||||||||||||| |
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| T |
5335456 |
acgttagaaaagacactaccatcc |
5335433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 5375981 - 5375913
Alignment:
| Q |
42 |
tcttggtgtgaataatagacgagctgccactactacaatattaaccacgcacaaagtcaccatgatgat |
110 |
Q |
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| T |
5375981 |
tcttggcgtgaataatagacgagtcgccattacaacaataataaccatgcagaaagtcaccatgatgat |
5375913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 5427984 - 5427936
Alignment:
| Q |
331 |
gaactgttatagttggcatacaatgacaaccatcatagttggcacaaat |
379 |
Q |
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| T |
5427984 |
gaactgttgtagttggcatacaaagaaaaccaccatagttggcacaaat |
5427936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 46294188 - 46294088
Alignment:
| Q |
94 |
aaagtcaccatgatgatcaggaatgagaattccaaaccctctg-taccaacgctaaaaaagacactaccatccacattcaaaacaacagtcccctcaagg |
192 |
Q |
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|||||||||| |||||||| |||||| || ||||||| | | ||| ||||||| | |||||||| |||||||||||||||||| | |||| |||||| |
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| T |
46294188 |
aaagtcaccacgatgatcatatatgagatttacaaacccccaggtactaacgctacagcagacactatcatccacattcaaaacaataatcccatcaagg |
46294089 |
T |
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| Q |
193 |
g |
193 |
Q |
| |
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| |
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|
| T |
46294088 |
g |
46294088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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