View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0263_low_38 (Length: 201)
Name: NF0263_low_38
Description: NF0263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0263_low_38
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12694228 - 12694343
Alignment:
Q
1
aataagaaattggtttaacatgatcagcagaacaacatccggtgcaatgaagagtgatgacttctagcagtttgatgttctatgtgagggcacatatcat
100
Q
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
12694228
aataagaaattgatttaacatgatcagcagaacaacatccggtgcaatgaagagtgatgacttctagcagtttgatgttctatgcgagggcacatatcat
12694327
T
Q
101
gccgtgggaactttat
116
Q
||||||||||||||||
T
12694328
gccgtgggaactttat
12694343
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 42448129 - 42448085
Alignment:
Q
48
tgaagagtgatgacttctagcagtttgatgttctatgtgagggca
92
Q
|||||||||| ||||| ||||||||||||||||||| |||||||
T
42448129
tgaagagtgacgactttgagcagtttgatgttctatgcgagggca
42448085
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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