View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0266_high_1 (Length: 426)
Name: NF0266_high_1
Description: NF0266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0266_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 11611660 - 11611528
Alignment:
| Q |
141 |
caataaacaactctgattgagtctagcagaagaggttagtcataaacctctatacgaattcatgctttcggaggtgcctatagttagtgaagattcctct |
240 |
Q |
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| T |
11611660 |
caataaacaactctgattgagtctagcagaagaggttagtcagaaacctctatacgaattcatgctttcggaggtgcctatagttagtgatgattcctct |
11611561 |
T |
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| Q |
241 |
aacatagatttttctgccagatcagggttctat |
273 |
Q |
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| T |
11611560 |
aacatagatttttcttgcagatctgggttctat |
11611528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 11611808 - 11611700
Alignment:
| Q |
11 |
cacagaacaaacatatcaacaagttagtctaactata----aagagtgcattcattttcattttcacaattcatcaagagtgaatccttaacaattgtct |
106 |
Q |
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| T |
11611808 |
cacaaaacaaacatattaacaagttagtctaactatatataaaaaatgcattcattttcagtttcacaattcatcaagtgtgtatccttaacatttggat |
11611709 |
T |
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| Q |
107 |
aaacatatt |
115 |
Q |
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| T |
11611708 |
aaagatatt |
11611700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 11611213 - 11611157
Alignment:
| Q |
301 |
tatacagtaatatcaaacaaagttcagaaccacatttaatgtctatttttctaaaaa |
357 |
Q |
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| T |
11611213 |
tatacagtaatatcaaacaaacttcagaaccatatttaatgtctatttttttaaaaa |
11611157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 11610909 - 11610864
Alignment:
| Q |
352 |
taaaaataaattattaaatttgaatatttgaattactacttgacag |
397 |
Q |
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| T |
11610909 |
taaaaataaattattaaatttgaatatttgaagtactacttgacag |
11610864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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