View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0266_high_6 (Length: 269)

Name: NF0266_high_6
Description: NF0266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0266_high_6
NF0266_high_6
[»] chr3 (5 HSPs)
chr3 (43-247)||(11651873-11652077)
chr3 (147-247)||(48648903-48649003)
chr3 (147-235)||(51826769-51826857)
chr3 (92-131)||(48648835-48648874)
chr3 (50-78)||(51826988-51827016)
[»] chr7 (3 HSPs)
chr7 (43-247)||(31954498-31954702)
chr7 (147-238)||(31953570-31953661)
chr7 (92-131)||(31953690-31953729)
[»] chr5 (5 HSPs)
chr5 (43-238)||(41045956-41046151)
chr5 (43-191)||(31082169-31082317)
chr5 (43-137)||(22799148-22799242)
chr5 (43-137)||(19366001-19366095)
chr5 (152-235)||(16154735-16154818)
[»] chr4 (4 HSPs)
chr4 (43-247)||(5590306-5590513)
chr4 (43-247)||(48127857-48128064)
chr4 (147-247)||(24158550-24158650)
chr4 (92-131)||(24158482-24158521)
[»] chr1 (2 HSPs)
chr1 (43-137)||(50271194-50271288)
chr1 (147-247)||(50271067-50271167)
[»] chr2 (2 HSPs)
chr2 (147-247)||(23501793-23501893)
chr2 (52-131)||(23501917-23501996)
[»] chr6 (3 HSPs)
chr6 (147-221)||(33436004-33436078)
chr6 (92-131)||(33435936-33435975)
chr6 (50-78)||(33435845-33435873)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 247
Target Start/End: Original strand, 11651873 - 11652077
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||         
T  11651873 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 11651972  T
Q  143 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 242  Q
        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  11651973 ttttacataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttcttcccattg 11652072  T
Q  243 cttct 247  Q
     ||||    
T  11652073 tttct 11652077  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 48648903 - 48649003
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| |||    
T  48648903 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 48649002  T
Q  247 t 247  Q
    |    
T  48649003 t 48649003  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 51826857 - 51826769
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 235  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||    
T  51826857 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagcctcatttctcta 51826769  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 48648835 - 48648874
Alignment:
Q  92 atgaattgaagtgttgttctacttgttcaacaagttcaat 131  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  48648835 atgaatggaagtgatgttctacttgttcaacaagttcaat 48648874  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 51827016 - 51826988
Alignment:
Q  50 tattgaggacatggaattcataacaacaa 78  Q
    |||||||||||||||||||||||||||||    
T  51827016 tattgaggacatggaattcataacaacaa 51826988  T

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Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 247
Target Start/End: Complemental strand, 31954702 - 31954498
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 142  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||         
T  31954702 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 31954603  T
Q  143 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 242  Q
        |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  31954602 ttttacataatattgcttgttaatttaatcttgattaatattttgaattcaaaatgatcgaggctgctgtatcgtgcaagccccatttttctacccattg 31954503  T
Q  243 cttct 247  Q
     ||||    
T  31954502 tttct 31954498  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 31953661 - 31953570
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccc 238  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||    
T  31953661 acataataatgcttgttaatttaatcttcattaatattttgaattcaaaatgattgaggctgctgtgtcgtgcaagcctcatttctctaccc 31953570  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 31953729 - 31953690
Alignment:
Q  92 atgaattgaagtgttgttctacttgttcaacaagttcaat 131  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  31953729 atgaatggaagtcttgttctacttgttcaacaagttcaat 31953690  T

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Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 41045956 - 41046151
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 142  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||         
T  41045956 tcaaccgtattgagtacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaataagttcaatgcataatttat 41046055  T
Q  143 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccc 238  Q
        |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  41046056 ttttacataataattcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctaccc 41046151  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 31082317 - 31082169
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||         
T  31082317 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactaatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttta 31082218  T
Q  143 nnngacataataatgcttgttaatttaattttgattaatattttgaatt 191  Q
        ||||||||||||||||||||||||| |||||||||||||||||||    
T  31082217 ttttacataataatgcttgttaatttaatcttgattaatattttgaatt 31082169  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 22799242 - 22799148
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 137  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22799242 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataa 22799148  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 19366095 - 19366001
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 137  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||    
T  19366095 tcaaccgtattgaggacatggaattcataacaacgctgtattgccaccgatgatatgaagtgttgttctacttcttcaacaagttcaatgcataa 19366001  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 16154735 - 16154818
Alignment:
Q  152 ataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 235  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||    
T  16154735 ataatgcttgttaattaaatcttgattaatattttgaattcaaaatgatcgaggcggctgtatcgtgcaagcctcatttctcta 16154818  T

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Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 43 - 247
Target Start/End: Complemental strand, 5590513 - 5590306
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa---nn 139  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  5590513 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 5590414  T
Q  140 nnnnnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 239  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5590413 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 5590314  T
Q  240 ttgcttct 247  Q
    ||| ||||    
T  5590313 ttgtttct 5590306  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 43 - 247
Target Start/End: Original strand, 48127857 - 48128064
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa---nn 139  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  48127857 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 48127956  T
Q  140 nnnnnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 239  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  48127957 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 48128056  T
Q  240 ttgcttct 247  Q
    ||| ||||    
T  48128057 ttgtttct 48128064  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 24158550 - 24158650
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| ||| |||    
T  24158550 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 24158649  T
Q  247 t 247  Q
    |    
T  24158650 t 24158650  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 24158482 - 24158521
Alignment:
Q  92 atgaattgaagtgttgttctacttgttcaacaagttcaat 131  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  24158482 atgaatggaagtgatgttctacttgttcaacaagttcaat 24158521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 50271288 - 50271194
Alignment:
Q  43 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50271288 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 50271194  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 50271167 - 50271067
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||    
T  50271167 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctacccattgtttc 50271068  T
Q  247 t 247  Q
    |    
T  50271067 t 50271067  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 23501893 - 23501793
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgcttc 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||||| ||| |||    
T  23501893 acataataatgcttgttaatttaatcttgattaatattttgaattaaaaatgattgaggctagtgtatcgtgcaaacctcatttctctacccattgtttc 23501794  T
Q  247 t 247  Q
    |    
T  23501793 t 23501793  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 23501996 - 23501917
Alignment:
Q  52 ttgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaat 131  Q
    |||||||||| ||||| ||||||||||| |||| ||||  |||||||| ||||||||| ||||||||| |||||||||||    
T  23501996 ttgaggacatagaattgataacaacaatatattaccactgatgaattgtagtgttgttatacttgttcgacaagttcaat 23501917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 33436004 - 33436078
Alignment:
Q  147 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaa 221  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  33436004 acataataatgcttgttaatttaatcttgattaatattttgaattcaaactgactgaggttgctgtatcgtgcaa 33436078  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 33435936 - 33435975
Alignment:
Q  92 atgaattgaagtgttgttctacttgttcaacaagttcaat 131  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33435936 atgaatggaagtgttgttctacttgttcaacaagttcaat 33435975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 33435845 - 33435873
Alignment:
Q  50 tattgaggacatggaattcataacaacaa 78  Q
    |||||||||||||||||||||||||||||    
T  33435845 tattgaggacatggaattcataacaacaa 33435873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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