View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0266_low_19 (Length: 204)
Name: NF0266_low_19
Description: NF0266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0266_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 10088766 - 10088636
Alignment:
| Q |
56 |
ttgcacttttccatagtccaaaatgtaccaaacaagaatacatggatcacagtgctatagcgctatggtgtagcagaatttaaacaaatcgctattgttc |
155 |
Q |
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| T |
10088766 |
ttgcacttttccatagtccaaaatgtaccaaacaagaataaatggatcacagtgctataacgctatggcgtagcagaatttaaacaaatcgctattgttc |
10088667 |
T |
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| Q |
156 |
cgcaatacagtatttaatttatgtagaaaat |
186 |
Q |
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| T |
10088666 |
cgcaatacagtatttaatttatgtagaaaat |
10088636 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 55470013 - 55469965
Alignment:
| Q |
109 |
gctatagcgctatggtgtagcagaatttaaacaaatcgctattgttccg |
157 |
Q |
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| T |
55470013 |
gctataccgctatagtgtagcggaatttaaacaaaccgctattgttccg |
55469965 |
T |
|
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 27743125 - 27743176
Alignment:
| Q |
107 |
gtgctatagcgctatggtgtagcagaatttaaacaaatcgctattgttccgc |
158 |
Q |
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| T |
27743125 |
gtgctatagcgctatcgtgtgtcagaattttaacaaattgctattgttccgc |
27743176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 42581863 - 42581908
Alignment:
| Q |
110 |
ctatagcgctatggtgtagcagaatttaaacaaatcgctattgttc |
155 |
Q |
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| T |
42581863 |
ctatagcgctatgatgtagcagaattccaacaaatcgctcttgttc |
42581908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 21891005 - 21891050
Alignment:
| Q |
125 |
gtagcagaatttaaacaaatcgctattgttccgcaatacagtattt |
170 |
Q |
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| T |
21891005 |
gtagcagaatttcaacaaattgctattgttccacaatacaatattt |
21891050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 32427188 - 32427143
Alignment:
| Q |
117 |
gctatggtgtagcagaatttaaacaaatcgctattgttccgcaata |
162 |
Q |
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| T |
32427188 |
gctatggtgtagcagaatttgaacaaaccattattgttccgcaata |
32427143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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