View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0266_low_2 (Length: 417)

Name: NF0266_low_2
Description: NF0266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0266_low_2
NF0266_low_2
[»] chr1 (26 HSPs)
chr1 (101-406)||(19059514-19059819)
chr1 (284-406)||(26552128-26552250)
chr1 (284-405)||(10227718-10227839)
chr1 (284-369)||(23346425-23346510)
chr1 (284-369)||(48871410-48871495)
chr1 (284-355)||(19059380-19059451)
chr1 (287-370)||(50892972-50893055)
chr1 (287-369)||(28217692-28217774)
chr1 (284-370)||(39669230-39669316)
chr1 (284-370)||(41833880-41833966)
chr1 (309-369)||(7062038-7062098)
chr1 (284-344)||(10227910-10227970)
chr1 (284-355)||(26551996-26552067)
chr1 (287-347)||(7062192-7062251)
chr1 (284-347)||(48752589-48752651)
chr1 (284-344)||(48871253-48871312)
chr1 (284-344)||(50893161-50893220)
chr1 (284-365)||(50904997-50905080)
chr1 (292-347)||(28217544-28217598)
chr1 (284-347)||(42180577-42180639)
chr1 (309-370)||(42180744-42180805)
chr1 (287-343)||(23346620-23346675)
chr1 (284-347)||(4156898-4156960)
chr1 (284-347)||(41834071-41834133)
chr1 (296-347)||(50905107-50905158)
chr1 (308-347)||(39669086-39669125)
[»] chr2 (21 HSPs)
chr2 (284-405)||(42028584-42028705)
chr2 (294-406)||(2059620-2059732)
chr2 (284-403)||(13279974-13280093)
chr2 (284-406)||(31860221-31860343)
chr2 (295-371)||(16115063-16115139)
chr2 (284-405)||(7317772-7317893)
chr2 (284-370)||(31470593-31470678)
chr2 (287-369)||(38086140-38086222)
chr2 (284-360)||(15332844-15332920)
chr2 (287-355)||(16115231-16115299)
chr2 (284-355)||(42028765-42028836)
chr2 (292-355)||(2059504-2059567)
chr2 (284-347)||(31860085-31860148)
chr2 (284-347)||(36059282-36059345)
chr2 (284-344)||(3671827-3671886)
chr2 (293-369)||(3671996-3672072)
chr2 (287-355)||(7317644-7317712)
chr2 (284-347)||(38085973-38086035)
chr2 (284-336)||(13279846-13279898)
chr2 (287-344)||(31470776-31470832)
chr2 (284-335)||(15330455-15330505)
[»] chr5 (29 HSPs)
chr5 (284-406)||(26534634-26534756)
chr5 (287-406)||(791601-791720)
chr5 (296-406)||(130384-130494)
chr5 (284-405)||(8323844-8323966)
chr5 (284-401)||(42630848-42630965)
chr5 (292-370)||(33377820-33377898)
chr5 (284-369)||(8489129-8489214)
chr5 (284-370)||(5146675-5146761)
chr5 (284-370)||(13823320-13823406)
chr5 (295-369)||(40881992-40882066)
chr5 (284-369)||(6518209-6518294)
chr5 (284-369)||(19898927-19899012)
chr5 (284-369)||(35454623-35454707)
chr5 (284-355)||(26534512-26534583)
chr5 (292-370)||(228731-228809)
chr5 (284-355)||(130260-130331)
chr5 (284-355)||(8323713-8323784)
chr5 (287-369)||(40881801-40881881)
chr5 (293-366)||(27319643-27319716)
chr5 (287-347)||(19897234-19897293)
chr5 (284-347)||(14388515-14388577)
chr5 (284-347)||(35454457-35454519)
chr5 (284-355)||(42630717-42630788)
chr5 (284-346)||(14069867-14069928)
chr5 (284-341)||(6518404-6518460)
chr5 (284-335)||(791810-791861)
chr5 (287-346)||(5146513-5146571)
chr5 (284-362)||(13823156-13823233)
chr5 (287-336)||(228990-229038)
[»] chr4 (14 HSPs)
chr4 (284-405)||(40534100-40534221)
chr4 (284-405)||(3102677-3102798)
chr4 (297-405)||(9231717-9231825)
chr4 (284-369)||(18936850-18936935)
chr4 (284-369)||(37177799-37177884)
chr4 (284-355)||(40533969-40534040)
chr4 (284-355)||(3102546-3102617)
chr4 (284-355)||(13690221-13690292)
chr4 (284-355)||(9231586-9231657)
chr4 (284-347)||(11147020-11147083)
chr4 (284-363)||(18381488-18381567)
chr4 (284-344)||(5121005-5121065)
chr4 (284-358)||(18936682-18936755)
chr4 (309-343)||(37177654-37177688)
[»] chr3 (14 HSPs)
chr3 (284-406)||(33214449-33214571)
chr3 (284-403)||(27073047-27073166)
chr3 (287-406)||(36274128-36274247)
chr3 (284-369)||(19580483-19580568)
chr3 (284-370)||(36635410-36635496)
chr3 (284-355)||(10598814-10598885)
chr3 (284-355)||(33214626-33214697)
chr3 (284-369)||(11651006-11651091)
chr3 (284-355)||(33219078-33219149)
chr3 (292-355)||(36274312-36274375)
chr3 (284-346)||(36635244-36635305)
chr3 (284-336)||(27072919-27072971)
chr3 (349-405)||(33219209-33219265)
chr3 (296-336)||(10599004-10599044)
[»] chr8 (14 HSPs)
chr8 (284-405)||(37994845-37994966)
chr8 (284-369)||(41539776-41539861)
chr8 (284-370)||(2814416-2814502)
chr8 (284-370)||(397177-397263)
chr8 (294-371)||(25101746-25101823)
chr8 (284-358)||(14193509-14193582)
chr8 (292-369)||(14193337-14193414)
chr8 (284-355)||(37994714-37994785)
chr8 (284-347)||(41539966-41540028)
chr8 (284-347)||(2814249-2814311)
chr8 (292-355)||(44036828-44036891)
chr8 (284-346)||(397013-397074)
chr8 (101-157)||(43327148-43327204)
chr8 (338-371)||(44036985-44037018)
[»] scaffold0214 (2 HSPs)
scaffold0214 (284-405)||(11632-11754)
scaffold0214 (284-355)||(11814-11885)
[»] chr6 (8 HSPs)
chr6 (284-406)||(33022304-33022426)
chr6 (292-370)||(21389035-21389113)
chr6 (284-370)||(7789842-7789928)
chr6 (287-355)||(33022173-33022241)
chr6 (284-347)||(21389217-21389279)
chr6 (292-360)||(7789681-7789748)
chr6 (292-368)||(28472535-28472611)
chr6 (292-368)||(29859723-29859800)
[»] scaffold0135 (2 HSPs)
scaffold0135 (297-405)||(37583-37691)
scaffold0135 (284-355)||(37452-37523)
[»] chr7 (10 HSPs)
chr7 (284-370)||(7298641-7298727)
chr7 (284-370)||(40521188-40521274)
chr7 (284-406)||(19805549-19805672)
chr7 (284-347)||(40521022-40521084)
chr7 (284-347)||(46567963-46568025)
chr7 (284-346)||(7298833-7298894)
chr7 (304-370)||(46568130-46568196)
chr7 (287-347)||(28949001-28949060)
chr7 (284-347)||(16979613-16979675)
chr7 (284-355)||(19804803-19804874)
[»] scaffold0140 (1 HSPs)
scaffold0140 (284-346)||(15853-15915)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 101 - 406
Target Start/End: Complemental strand, 19059819 - 19059514
Alignment:
Q  101 tgatccttatgagtaacaacggattgaagaagaatgatatagattgtatcgaatgtaagaaaaattgtgtgtgacacacgacttggtatagaattgtgtg 200  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  19059819 tgatccctatgagtaacaacagattgaagaagaatgatatagattgtttcgaatgtaagaaaaattgtgtg--acacacgacatggtatagaattgtgtg 19059722  T
Q  201 tgacacacaacttggagaataatacacataaaaaatcactcgtggattccaaagaccatcccccacacataa-aaacatatcctttc-ttgtataggaac 298  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  19059721 tgacacacgacttggagaataatacacataaaaaatcactcatggattccaaagaccatcccccacacataacaaacatatcctttctttgtgtaggaac 19059622  T
Q  299 gaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaactagtcctttct 398  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||| || |||||||||||||||||||||||       ||||||||| ||| ||||||    
T  19059621 gaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattataaaaaaataaatcaaccagtactttct 19059522  T
Q  399 ctctctct 406  Q
    ||||||||    
T  19059521 ctctctct 19059514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 26552250 - 26552128
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||    
T  26552250 ttcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 26552151  T
Q  384 caactagtcctttctctctctct 406  Q
    |||||||||||||||||||||||    
T  26552150 caactagtcctttctctctctct 26552128  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 10227718 - 10227839
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  10227718 ttcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 10227817  T
Q  384 caactagtcctttctctctctc 405  Q
     |||||||||||||||||||||    
T  10227818 taactagtcctttctctctctc 10227839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 23346425 - 23346510
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| || |||| |||||||||||||    
T  23346425 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt 23346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 48871495 - 48871410
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||  |||||| ||||||| |||||||||||||    
T  48871495 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt 48871410  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 19059380 - 19059451
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  19059380 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 287 - 370
Target Start/End: Original strand, 50892972 - 50893055
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    |||| ||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  50892972 ttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 50893055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 28217774 - 28217692
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||| || ||||||| |||||||||||||    
T  28217774 ttgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt 28217692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 39669316 - 39669230
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| ||| ||||||| |||| ||||||||||||||| |||||||||||| |||||||||  ||||||| ||||||||||||||    
T  39669316 ttcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataatta 39669230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 41833880 - 41833966
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||||||| |||||| ||||  ||||||||||||| |||||||||||||| |||||||||| || |||| ||||||||||||||    
T  41833880 ttcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataatta 41833966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 7062038 - 7062098
Alignment:
Q  309 tatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt 7062098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 10227970 - 10227910
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacac 344  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  10227970 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 26551996 - 26552067
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||| |||||||    
T  26551996 ttcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt 26552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 7062251 - 7062192
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  7062251 ttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtc 7062192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 48752651 - 48752589
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  48752651 ttcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 48752589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 48871253 - 48871312
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacac 344  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |||||||    
T  48871253 ttcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacac 48871312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 50893220 - 50893161
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacac 344  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  50893220 ttcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacac 50893161  T

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Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 50904997 - 50905080
Alignment:
Q  284 ttcttgtataggaacgaacctaacctat--cattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaat 365  Q
    ||||||| |||||||||||||||  |||  |||| ||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  50904997 ttcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaat 50905080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 28217544 - 28217598
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  28217544 taggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc 28217598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 42180577 - 42180639
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||| || |||| |||||||||||||||||||| ||||||||||    
T  42180577 ttcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtc 42180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 42180805 - 42180744
Alignment:
Q  309 tatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    |||||||||||||||||||||| ||||| ||||||| || || |||| ||||||||||||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataatta 42180744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 23346675 - 23346620
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgaca 343  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca 23346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 4156898 - 4156960
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||| ||||||||| ||||||||||||||| || ||||||||| ||||||||||    
T  4156898 ttcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtc 4156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 41834133 - 41834071
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| ||||||||||| |||| || |||| |||||||||||||||||||| ||||||||||    
T  41834133 ttcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtc 41834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 50905158 - 50905107
Alignment:
Q  296 aacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||| |||||    
T  50905158 aacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 39669086 - 39669125
Alignment:
Q  308 ctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  39669086 ctatcattcttacaaacaataaattaaaatatgatacgtc 39669125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 42028584 - 42028705
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  42028584 ttcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaattaaat 42028683  T
Q  384 caactagtcctttctctctctc 405  Q
    ||||||||||||||||||||||    
T  42028684 caactagtcctttctctctctc 42028705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 2059732 - 2059620
Alignment:
Q  294 ggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaactagtcc 393  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||     
T  2059732 ggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtca 2059633  T
Q  394 tttctctctctct 406  Q
    |||||||||||||    
T  2059632 tttctctctctct 2059620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 13280093 - 13279974
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||       |||||    
T  13280093 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattataaaaaaataaat 13279994  T
Q  384 caactagtcctttctctctc 403  Q
    |||| |||||||||||||||    
T  13279993 caacaagtcctttctctctc 13279974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 31860343 - 31860221
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||       |||||    
T  31860343 ttcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattataaaaaaataaat 31860244  T
Q  384 caactagtcctttctctctctct 406  Q
     ||||||||||||||||||||||    
T  31860243 taactagtcctttctctctctct 31860221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 16115063 - 16115139
Alignment:
Q  295 gaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattat 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16115063 gaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 16115139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 7317893 - 7317772
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |  || ||||||||||||||||||||       |||||    
T  7317893 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattataaaaaaataaat 7317794  T
Q  384 caactagtcctttctctctctc 405  Q
    ||||||||| ||||||||||||    
T  7317793 caactagtcatttctctctctc 7317772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 31470593 - 31470678
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  31470593 ttcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 31470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 38086222 - 38086140
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    |||| |||| || |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  38086222 ttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataatt 38086140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 15332920 - 15332844
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttctttt 360  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||| ||||    
T  15332920 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttttatttt 15332844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 16115299 - 16115231
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  16115299 ttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt 16115231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 42028836 - 42028765
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||    
T  42028836 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 42028765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 2059504 - 2059567
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||    
T  2059504 taggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt 2059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 31860085 - 31860148
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  31860085 ttcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 36059345 - 36059282
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  36059345 ttcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 36059282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 3671827 - 3671886
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacac 344  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  3671827 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 3671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 3672072 - 3671996
Alignment:
Q  293 aggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||||| ||||  ||||||| ||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  3672072 aggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatt 3671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 7317644 - 7317712
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||    
T  7317644 ttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt 7317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 38085973 - 38086035
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  38085973 ttcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 38086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 13279846 - 13279898
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaa 336  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  13279846 ttcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 13279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 31470832 - 31470776
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacac 344  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  31470832 ttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacac 31470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 15330455 - 15330505
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaa 335  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  15330455 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 26534756 - 26534634
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  26534756 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 26534657  T
Q  384 caactagtcctttctctctctct 406  Q
    |||||||||||||||||||||||    
T  26534656 caactagtcctttctctctctct 26534634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 287 - 406
Target Start/End: Original strand, 791601 - 791720
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaa 386  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       ||||| ||    
T  791601 ttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaattaa 791700  T
Q  387 ctagtcctttctctctctct 406  Q
    ||||||||||||||||||||    
T  791701 ctagtcctttctctctctct 791720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 130494 - 130384
Alignment:
Q  296 aacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaactagtcctt 395  Q
    ||||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||       |||||||||||||||||    
T  130494 aacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt 130395  T
Q  396 tctctctctct 406  Q
    |||||||||||    
T  130394 tctctctctct 130384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 8323966 - 8323844
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattat-nnnnnnntaaa 382  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||        ||||    
T  8323966 ttcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaaataaa 8323867  T
Q  383 tcaactagtcctttctctctctc 405  Q
    |||||||||||||||||||||||    
T  8323866 tcaactagtcctttctctctctc 8323844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 42630965 - 42630848
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||       | |||    
T  42630965 ttcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaaatgaat 42630866  T
Q  384 caactagtcctttctctc 401  Q
    ||||||||||| ||||||    
T  42630865 caactagtcctctctctc 42630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 33377898 - 33377820
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  33377898 taggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 33377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 8489129 - 8489214
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  8489129 ttcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt 8489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 5146761 - 5146675
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| ||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  5146761 ttcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 5146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 13823406 - 13823320
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  13823406 ttcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta 13823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 40882066 - 40881992
Alignment:
Q  295 gaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatt 40881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 6518209 - 6518294
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||  || ||| ||||||| |||||||||||||    
T  6518209 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatt 6518294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 19899012 - 19898927
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||||||||||||| |||||| ||| ||||||| |||||||||||||    
T  19899012 ttcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 35454707 - 35454623
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||  || |||||||||    
T  35454707 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatt 35454623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 26534512 - 26534583
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||    
T  26534512 ttcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 228731 - 228809
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||| |||||||||  ||||||| ||||||||||||||    
T  228731 taggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataatta 228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 130260 - 130331
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||||||||||| |||  ||||||||||||||||||||| |||||||||| |||||||    
T  130260 ttcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 8323713 - 8323784
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||||||||||||||||  |||||||||| ||||||||| |||||||||| |||||||    
T  8323713 ttcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt 8323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 369
Target Start/End: Original strand, 40881801 - 40881881
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    |||| ||||||||||||||||  || |||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  40881801 ttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 40881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 27319716 - 27319643
Alignment:
Q  293 aggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaata 366  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||    
T  27319716 aggaaccaatctaacatatcattcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata 27319643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 19897234 - 19897293
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  19897234 ttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 19897293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 14388577 - 14388515
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  14388577 ttcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 35454457 - 35454519
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  35454457 ttcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 35454519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 42630717 - 42630788
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||| ||||| ||||||| || |||||||    
T  42630717 ttcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt 42630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 14069867 - 14069928
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgt 346  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  14069867 ttcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 6518460 - 6518404
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatga 341  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  6518460 ttcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatga 6518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 791861 - 791810
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaa 335  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  791861 ttcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 5146513 - 5146571
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgt 346  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  5146513 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt 5146571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 13823156 - 13823233
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaa 362  Q
    ||||||| |||||||||||||||| |||||||| || |||||| ||| ||||| |||||||||  || |||||||||||    
T  13823156 ttcttgtgtaggaacgaacctaac-tatcattcgtataaacaataaactaaaacatgacacgtattttttttcttttaa 13823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 229038 - 228990
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaa 336  Q
    |||| ||| ||||||| |||| ||||||||||||||||||||||||||||    
T  229038 ttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaa 228990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 40534221 - 40534100
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  40534221 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaattaaat 40534122  T
Q  384 caactagtcctttctctctctc 405  Q
    ||||||||||||||||||||||    
T  40534121 caactagtcctttctctctctc 40534100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 3102798 - 3102677
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||       |||||    
T  3102798 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattataaaaaattaaat 3102699  T
Q  384 caactagtcctttctctctctc 405  Q
    ||||||||||||||||||||||    
T  3102698 caactagtcctttctctctctc 3102677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 9231825 - 9231717
Alignment:
Q  297 acgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaactagtccttt 396  Q
    |||||||||||||||||| ||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||       ||||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtccttt 9231726  T
Q  397 ctctctctc 405  Q
    |||||||||    
T  9231725 ctctctctc 9231717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 18936935 - 18936850
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||  |||||||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  18936935 ttcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 18936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 37177884 - 37177799
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||    
T  37177884 ttcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt 37177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 40533969 - 40534040
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  40533969 ttcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 3102546 - 3102617
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||    
T  3102546 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 13690221 - 13690292
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||    
T  13690221 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 9231586 - 9231657
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||| |||||||    
T  9231586 ttcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 11147020 - 11147083
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  11147020 ttcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 18381567 - 18381488
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaa 363  Q
    ||||||| |||||||||||||||| | |||||||||||| ||||||||||||| ||||||| || ||||||| |||||||    
T  18381567 ttcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 5121065 - 5121005
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacac 344  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  5121065 ttcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 18936682 - 18936755
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttctt 358  Q
    ||||||| || |||||||| |||| |||||||||||||||||||||||||||| |||| ||||| || |||||||    
T  18936682 ttcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatttttttctt 18936755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 37177654 - 37177688
Alignment:
Q  309 tatcattcttacaaacaacaaattaaaatatgaca 343  Q
    |||||||||||||||||| ||||||||||||||||    
T  37177654 tatcattcttacaaacaataaattaaaatatgaca 37177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 33214449 - 33214571
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  33214449 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 33214548  T
Q  384 caactagtcctttctctctctct 406  Q
    ||||||||| |||||||||||||    
T  33214549 caactagtcatttctctctctct 33214571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 27073166 - 27073047
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  27073166 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 27073067  T
Q  384 caactagtcctttctctctc 403  Q
    |||| |||||||||||||||    
T  27073066 caacaagtcctttctctctc 27073047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 287 - 406
Target Start/End: Original strand, 36274128 - 36274247
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaa 386  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       ||||||||    
T  36274128 ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaatcaa 36274227  T
Q  387 ctagtcctttctctctctct 406  Q
    ||||| ||||||||||||||    
T  36274228 ctagttctttctctctctct 36274247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 19580568 - 19580483
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||    
T  19580568 ttcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 36635496 - 36635410
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  36635496 ttcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 36635410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 10598814 - 10598885
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||||||| |||||||    
T  10598814 ttcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 33214697 - 33214626
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||    
T  33214697 ttcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 11651006 - 11651091
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||| |  || ||||||| |||||||||||||    
T  11651006 ttcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatt 11651091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 33219078 - 33219149
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||  |||| |||||||    
T  33219078 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttt 33219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 36274375 - 36274312
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    |||||||||| ||||||||||||  |||||||||||||||||||| |||||||||| |||||||    
T  36274375 taggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 36635244 - 36635305
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgt 346  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  36635244 ttcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 27072919 - 27072971
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaa 336  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  27072919 ttcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 27072971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 33219265 - 33219209
Alignment:
Q  349 ttgttttcttttaaaataattatnnnnnnntaaatcaactagtcctttctctctctc 405  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  33219265 ttgttttcttttaaaataattataaaaaattaaatcaactagtcctttctctctctc 33219209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 10599044 - 10599004
Alignment:
Q  296 aacgaacctaacctatcattcttacaaacaacaaattaaaa 336  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  10599044 aacgaacctaacatatcatccttacaaacaacaaattaaaa 10599004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 37994966 - 37994845
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  37994966 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaattaaat 37994867  T
Q  384 caactagtcctttctctctctc 405  Q
    ||||||||||||||||||||||    
T  37994866 caactagtcctttctctctctc 37994845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 41539776 - 41539861
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  41539776 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt 41539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 2814502 - 2814416
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  2814502 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta 2814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 397263 - 397177
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| ||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  397263 ttcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 25101746 - 25101823
Alignment:
Q  294 ggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattat 371  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattat 25101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 14193582 - 14193509
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttctt 358  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || |||||||    
T  14193582 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttctt 14193509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 14193337 - 14193414
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatt 369  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||| ||||||| || ||||||| |||||||||||||    
T  14193337 taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt 14193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 37994714 - 37994785
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||    
T  37994714 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt 37994785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 41540028 - 41539966
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  41540028 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 41539966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 2814249 - 2814311
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  2814249 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtc 2814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 44036828 - 44036891
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||    
T  44036828 tagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt 44036891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 397013 - 397074
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgt 346  Q
    |||||||  ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||    
T  397013 ttcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgt 397074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 43327148 - 43327204
Alignment:
Q  101 tgatccttatgagtaacaacggattgaagaagaatgatatagattgtatcgaatgta 157  Q
    ||||||||||||||| ||||  |||| ||||||||||| |||||||||| |||||||    
T  43327148 tgatccttatgagtagcaacaaattggagaagaatgatttagattgtattgaatgta 43327204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 44037018 - 44036985
Alignment:
Q  338 atgacacgtccttgttttcttttaaaataattat 371  Q
    |||||||||| |||||||||||||||||||||||    
T  44037018 atgacacgtcgttgttttcttttaaaataattat 44036985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 11632 - 11754
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattat-nnnnnnntaaa 382  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||        ||||    
T  11632 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattataaaaaaactaaa 11731  T
Q  383 tcaactagtcctttctctctctc 405  Q
    |||||||||||||||||||||||    
T  11732 tcaactagtcctttctctctctc 11754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 11885 - 11814
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  11885 ttcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 33022426 - 33022304
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaat 383  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||       |||||    
T  33022426 ttcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 33022327  T
Q  384 caactagtcctttctctctctct 406  Q
    ||||||||| |||||||||||||    
T  33022326 caactagtcatttctctctctct 33022304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 21389035 - 21389113
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||    
T  21389035 taggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 7789928 - 7789842
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||  ||||||||||    
T  7789928 ttcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataatta 7789842  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 33022173 - 33022241
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  33022173 ttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 21389279 - 21389217
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  21389279 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 21389217  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 7789681 - 7789748
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttctttt 360  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||| ||||    
T  7789681 taggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttttttt 7789748  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 28472611 - 28472535
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataat 368  Q
    |||||||||||||||  ||||||| ||| |||||||||||||||  || ||||||  || |||||||||||||||||    
T  28472611 taggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat 28472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 29859800 - 29859723
Alignment:
Q  292 taggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacg-tccttgttttcttttaaaataat 368  Q
    |||||||||||||||  ||||||| ||| |||||||||||||||  || ||||| |  || |||||||||||||||||    
T  29859800 taggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttcttttaaaataat 29859723  T

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Target: scaffold0135 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 37691 - 37583
Alignment:
Q  297 acgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattatnnnnnnntaaatcaactagtccttt 396  Q
    |||||||||||||||||| ||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||       ||||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtccttt 37592  T
Q  397 ctctctctc 405  Q
    |||||||||    
T  37591 ctctctctc 37583  T

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Target: scaffold0135; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 37452 - 37523
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||| |||||||    
T  37452 ttcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 7298641 - 7298727
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  7298641 ttcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 7298727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 40521274 - 40521188
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||| ||||||||||||||    
T  40521274 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta 40521188  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 19805672 - 19805549
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataattat-nnnnnnntaaa 382  Q
    ||||||| ||||||||||| ||||||||||| |||| ||| |||||||||||| |||||||||| ||| |||||||||||||||||||        ||||    
T  19805672 ttcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattataaaataaataaa 19805573  T
Q  383 tcaactagtcctttctctctctct 406  Q
    |||||||||| |||||||||||||    
T  19805572 tcaactagtcatttctctctctct 19805549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 40521022 - 40521084
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40521022 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtc 40521084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 46567963 - 46568025
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  46567963 ttcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 46568025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 7298894 - 7298833
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgt 346  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  7298894 ttcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 46568196 - 46568130
Alignment:
Q  304 taacctatcattcttacaaacaacaaattaaaatatgacacgtccttgttttcttttaaaataatta 370  Q
    |||| |||||||||||||||||||||||||||| ||||||| || ||||||| ||| ||||||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta 46568130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 28949060 - 28949001
Alignment:
Q  287 ttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  28949060 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtc 28949001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 16979675 - 16979613
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtc 347  Q
    ||||||| |||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||    
T  16979675 ttcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtc 16979613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 19804803 - 19804874
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgtccttgtttt 355  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||| ||| | ||||| || |||||||    
T  19804803 ttcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt 19804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 15853 - 15915
Alignment:
Q  284 ttcttgtataggaacgaacctaacctatcattcttacaaacaacaaattaaaatatgacacgt 346  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  15853 ttcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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