View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0267_high_1 (Length: 867)
Name: NF0267_high_1
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0267_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 34796689 - 34796287
Alignment:
| Q |
1 |
ataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34796689 |
ataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatg |
34796590 |
T |
|
| Q |
101 |
ccatagctccaaacacacagaagaagcagcaccaacactacctatgcttgtacttgaagatgaaccagaagatggtgtttcatcttcctcagtagtgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34796589 |
ccatagctccaaacacacagaagaaccagcaccaacactacctatgcttgtacttgaagatgaaccagaagatggtgtttcatcttcctcagtagtgttg |
34796490 |
T |
|
| Q |
201 |
agatcaatcaaacccatcatagtgaagagaatctttagatgaagagagaaaaatgaaagtgttgtttattgttgtagtggtttcataataataataatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34796489 |
agatcaatcaaacccatcatagtgaagagaatattttgatgaagagagaaaaatgaaagtattgtttattgttgtagtggtttcataataataataatga |
34796390 |
T |
|
| Q |
301 |
tggttactacaagtagtagtgcattttatttgttttgcagagagcgtgaagaactttggcattggcaaaagaacctgacccaatacaccaaaaagaaaga |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34796389 |
tggttactacaagtagaagtgcattttatttgttttgcagagagcgtgaagaactttggcattggcaaaagaacctgacccaatacaccaaaaagaaaga |
34796290 |
T |
|
| Q |
401 |
gac |
403 |
Q |
| |
|
||| |
|
|
| T |
34796289 |
gac |
34796287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 605 - 779
Target Start/End: Complemental strand, 34796088 - 34795908
Alignment:
| Q |
605 |
gtgtgaaattacatactcctactctgtttgcaaatgtaaaaattgatcttttaaagtgagtgtatatttgtttcaatctttagaatgac------tatga |
698 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34796088 |
gtgtgaaattacatactcctactctgtgtgcaaatgtaaaaattgatcttttaaagtgagtgtatatttgtttcaatctttagaatgactatgtctatga |
34795989 |
T |
|
| Q |
699 |
ttgattctaaagatgtataattgattttaatatatttgtttgttgtcgagtaaagttgaagttaattttacttgaagttga |
779 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34795988 |
ttgattctaaagatgtataattgattttaatatatttgtttgttgtcgagtaaagttgaagttaattttacttgaagttga |
34795908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 34796186 - 34796112
Alignment:
| Q |
510 |
cactgaatgggcttttgggtaggcatcaaatccagctttcataagcatttgtaagttcaggtcacataaaaatgg |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34796186 |
cactgaatgggcttttgggtaggcatcaaatccagctttcataagcatttgtaagttcaggtcacataaaaatgg |
34796112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 4274417 - 4274533
Alignment:
| Q |
6 |
ggaaaatcatgaagatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccata |
105 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| || | |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
4274417 |
ggaaaatcatgagcttgttcaaagtgtccttgtggaacataaacaacaatgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccata |
4274516 |
T |
|
| Q |
106 |
gctccaaacacacagaa |
122 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
4274517 |
gctccaaacaaacagaa |
4274533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 736
Target Start/End: Complemental strand, 22310825 - 22310787
Alignment:
| Q |
698 |
attgattctaaagatgtataattgattttaatatatttg |
736 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
22310825 |
attgattctaaagatgtataattgattttgatatgtttg |
22310787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 748
Target Start/End: Original strand, 37056118 - 37056168
Alignment:
| Q |
698 |
attgattctaaagatgtataattgattttaatatatttgtttgttgtcgag |
748 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |||| |||| |||||| |
|
|
| T |
37056118 |
attgattctaaagacgtataattgattataatatgtttgattgtggtcgag |
37056168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 636 times since January 2019
Visitors: 2568