View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0267_high_3 (Length: 431)
Name: NF0267_high_3
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0267_high_3 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 33305090 - 33305480
Alignment:
| Q |
30 |
atctttactagttctaaggagtgtcttagatccaaatgtttcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33305090 |
atctttactagttctaaggagtgtcttagatccaaatgtttcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgact |
33305189 |
T |
|
| Q |
130 |
atgagataattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33305190 |
atgagataattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttg |
33305289 |
T |
|
| Q |
230 |
ctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33305290 |
ctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttg |
33305389 |
T |
|
| Q |
330 |
aaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgttcagcgttcat |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33305390 |
aaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgttcagcgttcat |
33305480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 70 - 412
Target Start/End: Original strand, 33286192 - 33286534
Alignment:
| Q |
70 |
tcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgactatgagataattgtttcaattttgtttatatttctaagata |
169 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||||||| | | |||| ||||| | | ||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
33286192 |
tcaaattgggaagatactgtaatatgaaaaacaaacaaaaatggagccattaatttgattttaagagaattgtttcaaatttgtttatatttctaagatg |
33286291 |
T |
|
| Q |
170 |
aacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaa |
269 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
33286292 |
aacatttataataagataatttatagtaccttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaa |
33286391 |
T |
|
| Q |
270 |
aatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtactt |
369 |
Q |
| |
|
|||||||||||||||| || ||||||||| || ||| | ||||||| ||||||||||||||| |||| || | ||||| ||||| | |||| || | |
|
|
| T |
33286392 |
aatttgatggcaaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacat |
33286491 |
T |
|
| Q |
370 |
gaagatgaggaatctaagattattcatttttgacacgtgttca |
412 |
Q |
| |
|
|| |||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
33286492 |
gatgatgagcaatctaagattactcatttttgacaagtgttca |
33286534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 30 - 404
Target Start/End: Original strand, 33263241 - 33263618
Alignment:
| Q |
30 |
atctttactagttctaaggagtgtcttagatccaaatgtt-tcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgac |
128 |
Q |
| |
|
|||||| |||| || | |||||| ||||||||||| |||| ||||||||||||||||||| |||||| | || || ||||||| | | |||||||||| |
|
|
| T |
33263241 |
atcttttctagctcgatggagtgacttagatccaa-tgttctcaaattgggcagatactgtgacatgaataaacaataaaaatagagccattactttgat |
33263339 |
T |
|
| Q |
129 |
tatgagataattgtttcaattttgtttatatttctaagataa---acattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaat |
225 |
Q |
| |
|
||| ||| ||||||||| | |||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
33263340 |
tataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgtttttccatagttgtgtaat |
33263439 |
T |
|
| Q |
226 |
tttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttg |
325 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||| | |||||| |
|
|
| T |
33263440 |
gttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttg |
33263539 |
T |
|
| Q |
326 |
tttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgaca |
404 |
Q |
| |
|
||||||| || | ||| ||||||||||| || |||||| ||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
33263540 |
tttgaaagacaacttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgaca |
33263618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 30 - 332
Target Start/End: Complemental strand, 31562289 - 31561987
Alignment:
| Q |
30 |
atctttactagttctaaggagtgtcttagatccaaatgtttcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgact |
129 |
Q |
| |
|
|||||||| || | || |||||| ||||||||||| | | | |||||||| |||||||| ||||| |||||||||||||||| | | |||||||||| | |
|
|
| T |
31562289 |
atctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactgtgacataaaaaacaaacaaaaatagagccattactttgatt |
31562190 |
T |
|
| Q |
130 |
atgagataattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttg |
229 |
Q |
| |
|
| ||||||||||||| | |||||||||| ||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
31562189 |
aaaagataattgtttctaatttgtttatagttctaagataattagtaataataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctg |
31562090 |
T |
|
| Q |
230 |
ctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttg |
329 |
Q |
| |
|
|| ||| |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||| |||||||||| | |
|
|
| T |
31562089 |
cttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaagccactcaacatatcttaatttgttcg |
31561990 |
T |
|
| Q |
330 |
aaa |
332 |
Q |
| |
|
||| |
|
|
| T |
31561989 |
aaa |
31561987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 33401373 - 33401529
Alignment:
| Q |
176 |
aataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| | | ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33401373 |
aataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttg |
33401472 |
T |
|
| Q |
276 |
atggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa |
332 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
33401473 |
ttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaa |
33401529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 90 - 418
Target Start/End: Original strand, 9167433 - 9167755
Alignment:
| Q |
90 |
gacatgtaaaacaaacaaaaatacaccaattactttgactatgagataattgtttcaattttgtttatatttctaagataaacattaataataagagaat |
189 |
Q |
| |
|
|||||| ||||| |||||||||| | | |||||||||| | | ||| ||||||||| | ||||||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
9167433 |
gacatgaaaaaccaacaaaaatagagccattactttgattgtaagaaaattgtttcgaatttgtttatatttctaaaataaacggtaataataagagagt |
9167532 |
T |
|
| Q |
190 |
ttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatactta |
289 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||| ||||| | || ||||||| || |||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
9167533 |
ttatagtacctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttg |
9167632 |
T |
|
| Q |
290 |
aaaggatattcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagat |
389 |
Q |
| |
|
||||||||| || ||| |||| |||| |||||| ||| |||| ||| ||||| | |||| || |||||| |||| |||||| ||||||||| |
|
|
| T |
9167633 |
aaaggatatcgataccactcaagatatcttaattcgttcgaaagactacatgg------taagatattccaaccgtatttgatgatgagcaatctaagac |
9167726 |
T |
|
| Q |
390 |
tattcatttttgacacgtgttcagcgttc |
418 |
Q |
| |
|
|| |||||||||||| ||||||| ||||| |
|
|
| T |
9167727 |
tactcatttttgacaagtgttcaacgttc |
9167755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 298
Target Start/End: Original strand, 33058209 - 33058438
Alignment:
| Q |
70 |
tcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgactatgagataattgtttcaattttgtttatatttctaagat- |
168 |
Q |
| |
|
|||||||||| |||||||| ||| || ||||| |||||| || | |||||||||| | | ||| |||||||| | |||||||||||||||||||| |
|
|
| T |
33058209 |
tcaaattgggaagatactgtgacgtgaaaaaccaacaaagttagcc--attactttgattgtaagagaattgttttgaatttgtttatatttctaagatg |
33058306 |
T |
|
| Q |
169 |
--aaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggt |
266 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
33058307 |
ataaatattaataataatagaatttatagtaccttcttgtttttccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggt |
33058406 |
T |
|
| Q |
267 |
gaaaatttgatggcaaatacttaaaaggatat |
298 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
33058407 |
gaaaatttgatggcaaatacttggaaggatat |
33058438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 412
Target Start/End: Original strand, 33272450 - 33272788
Alignment:
| Q |
70 |
tcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgactatgagataattgtttcaattttgtttatatttctaagata |
169 |
Q |
| |
|
|||||||||| |||||||| ||||| |||| |||||||||| | | ||||| |||| | | ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
33272450 |
tcaaattgggaagatactg--acatgaaaaaataacaaaaatagaaccattacattgattctaagagaattgtttcaaatttgtttatatttctaagata |
33272547 |
T |
|
| Q |
170 |
aacattaataataagagaatttata-gtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtga |
268 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |||||||||||| || | ||| || | ||||||||||||| ||| |||||||||||| |
|
|
| T |
33272548 |
aacattaataat---agaatttataggtaccttcttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtga |
33272644 |
T |
|
| Q |
269 |
aaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtact |
368 |
Q |
| |
|
||| ||| ||| | | |||| ||||||||| ||| ||| ||||||||| ||||| ||||||| ||| || |||| |||| ||| || |||| ||| |
|
|
| T |
33272645 |
aaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttgaaaggctcgatagactacctgggatattccgaccgcact |
33272744 |
T |
|
| Q |
369 |
tgaagatgaggaatctaagattattcatttttgacacgtgttca |
412 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||| || ||||||| |
|
|
| T |
33272745 |
tgattatgagcaatctaagattactcatttttgccaagtgttca |
33272788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 54 - 287
Target Start/End: Original strand, 33359348 - 33359579
Alignment:
| Q |
54 |
cttagatccaaatgtt-tcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgactatgagataattgtttcaattttg |
152 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||| |||||| ||||| ||||||| || | || || |||||| || |||||||| ||| | || | |
|
|
| T |
33359348 |
cttagatccaa-tgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaactagagca-ttgctttgattaaaagataattattttcaattgg |
33359444 |
T |
|
| Q |
153 |
tttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctac |
252 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||| |||| |||||||||||||| |
|
|
| T |
33359445 |
tttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctac |
33359544 |
T |
|
| Q |
253 |
aagttcattggggtgaaaatttgatggcaaatact |
287 |
Q |
| |
|
||||||||||| || |||| ||| ||||||||||| |
|
|
| T |
33359545 |
aagttcattggagttaaaacttgttggcaaatact |
33359579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 149 - 404
Target Start/End: Original strand, 33388770 - 33389022
Alignment:
| Q |
149 |
tttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||| |||||||||||| || | ||| | | |||||||| | |
|
|
| T |
33388770 |
tttgtttatatttctaagataaacattaataatca---aatgtataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaact |
33388866 |
T |
|
| Q |
249 |
ctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcc |
348 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||| |||||||| | || ||| ||||||||| ||||| ||||||||| |||| |||| || | |
|
|
| T |
33388867 |
ctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagactcgatgggctact |
33388966 |
T |
|
| Q |
349 |
tgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgaca |
404 |
Q |
| |
|
|| ||| | ||| |||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
33388967 |
tgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgaca |
33389022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 404
Target Start/End: Complemental strand, 33643956 - 33643711
Alignment:
| Q |
163 |
taagataaacattaataata----agagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttc |
258 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||| ||||| |||| |||| |||||||||||||| |
|
|
| T |
33643956 |
taagataaacattaataatatataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttg |
33643857 |
T |
|
| Q |
259 |
attggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcac |
358 |
Q |
| |
|
|||||| |||||||||||||||||| || | |||||||| |||||| ||||||||| |||||| ||||||| || | ||| ||| || |||| | |
|
|
| T |
33643856 |
attgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgc |
33643757 |
T |
|
| Q |
359 |
ccaccgtacttgaagatgaggaatctaagattattcatttttgaca |
404 |
Q |
| |
|
| |||| |||| | ||| || |||||||||||| |||||||||||| |
|
|
| T |
33643756 |
caaccgcactttatgatcagcaatctaagattactcatttttgaca |
33643711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 33410701 - 33410798
Alignment:
| Q |
185 |
agaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaa |
282 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| | |||| |||| ||||||||||| ||||||||||| ||||||||| || ||||||| |
|
|
| T |
33410701 |
agaatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaa |
33410798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 33410590 - 33410703
Alignment:
| Q |
54 |
cttagatccaaatgtttcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgactatgagataattgtttcaattttgt |
153 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| |||||| ||| |||||||||||| | |||||||||| ||| | | |||||||| | ||||| |
|
|
| T |
33410590 |
cttagatccaatgctttcaaattgggaaaatactgtgacatgaaaagcaaacaaaaatagagacattactttgattataacagaattgttttgaatttgt |
33410689 |
T |
|
| Q |
154 |
ttatatttctaaga |
167 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
33410690 |
ttatatctctaaga |
33410703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 118 - 332
Target Start/End: Complemental strand, 17440216 - 17440001
Alignment:
| Q |
118 |
attactttgactatgagataattgtttcaattttgtttatatttctaagataaacattaat-aataagagaatttatagtaccttcttgtttgtccatag |
216 |
Q |
| |
|
||||| |||| ||| ||| ||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
17440216 |
attacattgattataagaaaattgtttcgaatttgtttatatttcaaagataaacattaattaataagagaatttatggtaccttcttgtttttccatag |
17440117 |
T |
|
| Q |
217 |
ttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatat |
316 |
Q |
| |
|
| || ||| ||||| | | || ||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||||| | |||| ||||||||| |
|
|
| T |
17440116 |
gtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatat |
17440017 |
T |
|
| Q |
317 |
tttaatttgtttgaaa |
332 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
17440016 |
cttaatttgttcgaaa |
17440001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 1385 - 1535
Alignment:
| Q |
180 |
ataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatgg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||| || |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
1385 |
ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg |
1484 |
T |
|
| Q |
280 |
caaatacttaaaaggatattcatgccaatcaacatattttaatttgtttga |
330 |
Q |
| |
|
|| |||||| ||||||||| || ||| | ||||||| |||||||||||| |
|
|
| T |
1485 |
cagatacttgaaaggatatccagtccattgaacatatcgtaatttgtttga |
1535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 7131 - 7281
Alignment:
| Q |
180 |
ataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatgg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||| || |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
7131 |
ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg |
7230 |
T |
|
| Q |
280 |
caaatacttaaaaggatattcatgccaatcaacatattttaatttgtttga |
330 |
Q |
| |
|
|| |||||| ||||||||| || ||| | ||||||| |||||||||||| |
|
|
| T |
7231 |
cagatacttgaaaggatatccagtccattgaacatatcgtaatttgtttga |
7281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 332
Target Start/End: Complemental strand, 31503459 - 31503304
Alignment:
| Q |
177 |
ataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttga |
276 |
Q |
| |
|
||||| |||| ||||| ||||||||||||| | ||||| |||||| || |||| ||||| |||||||| || ||||||| ||| || |||||| |||| |
|
|
| T |
31503459 |
ataattagaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttga |
31503360 |
T |
|
| Q |
277 |
tggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa |
332 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||| |||||| ||| |||| |
|
|
| T |
31503359 |
cggcaaatacttgaaaggatattcactccattcaacatatcttaattcgttagaaa |
31503304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 31498136 - 31498070
Alignment:
| Q |
266 |
tgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa |
332 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||| |||| |||| |||||||||| |||| |
|
|
| T |
31498136 |
tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaa |
31498070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 31157992 - 31158108
Alignment:
| Q |
182 |
aagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggca |
281 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| | |||| | | | ||||||||| ||||||| |||||| |||||| || ||||| |
|
|
| T |
31157992 |
aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca |
31158091 |
T |
|
| Q |
282 |
aatacttaaaaggatat |
298 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
31158092 |
aatacttgaaaggatat |
31158108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 31471958 - 31471900
Alignment:
| Q |
54 |
cttagatccaaatgtttcaaattgggcagatactgggacatgtaaaacaaacaaaaata |
112 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
31471958 |
cttagatccaaatttctcaaattgggcagatactgtgacatgaaaaatcaacaaaaata |
31471900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 31478247 - 31478170
Alignment:
| Q |
239 |
aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatat |
316 |
Q |
| |
|
||||||||||| ||||||| ||| | || |||| | |||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
31478247 |
aagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattcactccactcaacatat |
31478170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 31484080 - 31484023
Alignment:
| Q |
241 |
gatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat |
298 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
31484080 |
gatcaattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggatat |
31484023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 31527234 - 31527318
Alignment:
| Q |
239 |
aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatt |
323 |
Q |
| |
|
|||||||| || ||||||| | ||| |||||| |||||||||||||| | ||||||||||| |||| ||||||||| |||||| |
|
|
| T |
31527234 |
aagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt |
31527318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 31149175 - 31149234
Alignment:
| Q |
239 |
aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat |
298 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||| |||||||||||||||| ||||||||| |
|
|
| T |
31149175 |
aagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatat |
31149234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 31491114 - 31491076
Alignment:
| Q |
182 |
aagagaatttatagtaccttcttgtttgtccatagttgt |
220 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31491114 |
aagagaatttatagtaccttcttgtctttccatagttgt |
31491076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 31503615 - 31503567
Alignment:
| Q |
47 |
ggagtgtcttagatccaaatgtttcaaattgggcagatactgggacatg |
95 |
Q |
| |
|
|||||| ||||||||||||| | |||||||| |||||||||| |||||| |
|
|
| T |
31503615 |
ggagtggcttagatccaaatttctcaaattgcgcagatactgtgacatg |
31503567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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