View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0267_low_2 (Length: 524)
Name: NF0267_low_2
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0267_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 44347937 - 44348400
Alignment:
| Q |
17 |
catcattgttggcgtgcttgtcaagccacgtgatgatgtcttcaaaaactttttcaatgttgtcatcaggctcaccagatgttaaaccatgccacattcc |
116 |
Q |
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| T |
44347937 |
catcattgttggcgtgcttgtcaagccatgtgatgatgtcttcaaaaactttttcaatgttgtcatcaggctcaccagatgttaaaccatgccacattcc |
44348036 |
T |
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| Q |
117 |
agggtacaatttaattgtcttatctttgctactagctctctcatataatgccctgcttacttctgggtctgtcactgtatctgtttctccatgcaataca |
216 |
Q |
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| T |
44348037 |
agggtacaatttaattgtcttatctttgctactagctctctcatataatgccctgcttacttctgggtctgtcactgtatctgtttctccatgcaataca |
44348136 |
T |
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| Q |
217 |
aaaaatggaaaggttacctgctcaaaattcacccaaaagtaccaaacaaattaggtatgatatgaaaagtaattacatttgagaagtgttgatttgaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44348137 |
aaaaatggaaaggttacctgctcaaaattcacccaaaagtaccaaacaaattaggtatgatatgaaaagtaattacatttgagaagtgttgatttgaata |
44348236 |
T |
|
| Q |
317 |
tttgttggcaaactgaaaaggtaacttgattatgtttgtgtttagataaacaatttaatgtttgtttggttttgccgcaacaaaaactaaaagtgatttg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44348237 |
tttgttggcaaactgaaaaggtaacttgattatgtttgtgtttagataaacaatttaatgtttgtttggttttgctgcaacaaaaactaaaagtgatttg |
44348336 |
T |
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| Q |
417 |
aatgtgaatcactttatgtttggatacattcacgtaacatgagttgaacaagaaaattgaggct |
480 |
Q |
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| T |
44348337 |
aatgtgaatcactttatgtttggatacattcacgtaacatgagttgaacaagaaaattgaggct |
44348400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 39562662 - 39562493
Alignment:
| Q |
79 |
tcatcaggctcaccagatgttaaaccatgccacattccagggtacaatttaattgtcttatctttgctactagctctctcatataatgccctgcttactt |
178 |
Q |
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||||||||||| |||| |||||| |||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| ||||||||| |
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| T |
39562662 |
tcatcaggctccccagctgttaagccatgccacattccagggtacaattttatggtcttgtctacactactagctctctcatataatgccttgcttactt |
39562563 |
T |
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| Q |
179 |
ctgggtctgtcactgtatctgtttctccatgcaatacaaaaaatggaaaggttacctgctcaaaattcac |
248 |
Q |
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| T |
39562562 |
ccgggtctgtcactttatcttcctctccatgtaacactaagaaaggcaacgtcacctgctcaaaattcac |
39562493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 52216331 - 52216378
Alignment:
| Q |
99 |
taaaccatgccacattccagggtacaatttaattgtcttatctttgct |
146 |
Q |
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| T |
52216331 |
taaaccatgccacattccagggtacaatttcagtgtcttatctttgct |
52216378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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