View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0267_low_3 (Length: 489)
Name: NF0267_low_3
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0267_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 3299641 - 3300115
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299641 |
ccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
3299740 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299741 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaat |
3299840 |
T |
|
| Q |
201 |
ccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299841 |
ccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttactt |
3299940 |
T |
|
| Q |
301 |
ccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299941 |
ccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaat |
3300040 |
T |
|
| Q |
401 |
ttgcaatttctgtttgatatttatgtttattagaacaggttatgtgtgcttcccaaaccatgcatgtcattaatt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300041 |
ttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaatt |
3300115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 3392534 - 3393008
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392534 |
ccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
3392633 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392634 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaat |
3392733 |
T |
|
| Q |
201 |
ccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392734 |
ccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttactt |
3392833 |
T |
|
| Q |
301 |
ccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392834 |
ccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaat |
3392933 |
T |
|
| Q |
401 |
ttgcaatttctgtttgatatttatgtttattagaacaggttatgtgtgcttcccaaaccatgcatgtcattaatt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392934 |
ttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaatt |
3393008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 1163676 - 1163333
Alignment:
| Q |
12 |
ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
111 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1163676 |
ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga |
1163577 |
T |
|
| Q |
112 |
tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttaga |
211 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | || | ||| |||||||||| |
|
|
| T |
1163576 |
tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttat |
1163477 |
T |
|
| Q |
212 |
agacctttttatccattggaggatttgcttgatg---gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac |
308 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163476 |
agacctttttttccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac |
1163377 |
T |
|
| Q |
309 |
caaaacaaggaagatgcttttcatttattagcttttttctattt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1163376 |
aaaaacaaggaagatgcttttcatttattagcttttttatattt |
1163333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 40418406 - 40418758
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
40418406 |
ccttcctgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaactc |
40418502 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatc-aaa |
199 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |||||| || | ||| ||| || || || |
|
|
| T |
40418503 |
ttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcgtaa |
40418602 |
T |
|
| Q |
200 |
tccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttact |
299 |
Q |
| |
|
|||||| || ||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || |||||||||| | |
|
|
| T |
40418603 |
tccccc-ctaccagaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgt |
40418701 |
T |
|
| Q |
300 |
tccaataac--caaaa--caaggaagatgcttttcatttattagcttttttctattt |
352 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
40418702 |
tccaataacaacaaaaatcaaggaagatgcttttcatttattaggttctttctattt |
40418758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 1850063 - 1850293
Alignment:
| Q |
12 |
ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
111 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850063 |
ccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
1850162 |
T |
|
| Q |
112 |
tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttaga |
211 |
Q |
| |
|
| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| || | || |||||| |||||| |||||| |
|
|
| T |
1850163 |
tttacaacaagaccctaaactcctcttcg---------------accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttaga |
1850247 |
T |
|
| Q |
212 |
agacctttttatccattggaggatttgcttgatggatgatccactt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1850248 |
agacctttttatccattggaggatttgcttgatggatgatctactt |
1850293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 39879943 - 39880297
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39879943 |
ccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactc |
39880039 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatca-aa |
199 |
Q |
| |
|
||||| || |||||||||||| ||||||||||| ||||| | ||||||| ||||||| ||| |||||| || | ||| ||| || ||| || |
|
|
| T |
39880040 |
ttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcagaa |
39880139 |
T |
|
| Q |
200 |
tccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttact |
299 |
Q |
| |
|
|||||| || |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| || | |
|
|
| T |
39880140 |
tccccc-ctaccagacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgt |
39880237 |
T |
|
| Q |
300 |
tccaataacca-------aaacaaggaagatgcttttcatttattagcttttttctattt |
352 |
Q |
| |
|
|||||||| | || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39880238 |
tccaataataacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39880297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 38987828 - 38988180
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38987828 |
ccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactc |
38987924 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaat |
200 |
Q |
| |
|
||||| || ||||||||||||||| || |||| |||||| | || |||| ||||||||||| || |||| | | ||| |||| || || | |
|
|
| T |
38987925 |
ttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccgaaatccaaacaaccactacacatatgacgggcccttcgtag |
38988024 |
T |
|
| Q |
201 |
ccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttactt |
300 |
Q |
| |
|
|||| || ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | ||||||||||||| || |
|
|
| T |
38988025 |
acccccctaccagaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgtt |
38988124 |
T |
|
| Q |
301 |
ccaataacca----aaacaaggaagatgcttttcatttattagcttttttctattt |
352 |
Q |
| |
|
|||||||| | || |||||||| |||| |||||||||||| || ||||||||| |
|
|
| T |
38988125 |
ccaataacaacaacaatcaaggaagctgctcttcatttattaggttctttctattt |
38988180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 39726547 - 39726906
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39726547 |
ccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactc |
39726643 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaat |
200 |
Q |
| |
|
||||| || ||||||||||||||| || |||| |||||| | || |||| ||||||||||| || |||| | | ||| |||| || || | |
|
|
| T |
39726644 |
ttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcaccctaccgaaatccaaacaaccactacacatatgacgggcccttcgtag |
39726743 |
T |
|
| Q |
201 |
ccccctttagaagacctttttatccattggaggatttgcttgatggatgat----ccacttacaagcttaaacaaacatcacttctattgatgttttgtt |
296 |
Q |
| |
|
|||| || ||||||||| ||||||||||||| |||||||| ||||||| | | |||| |||||||||||| ||||| | | ||||||||||||| |
|
|
| T |
39726744 |
acccccctatcagaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtt |
39726843 |
T |
|
| Q |
297 |
acttccaataacca-------aaacaaggaagatgcttttcatttattagcttttttctattt |
352 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39726844 |
tgttccaataataacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39726906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 39168975 - 39169101
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtaga---gttgttgctgttcaggataagtgggaatctgattatcaa |
97 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||| | || || ||||||||| ||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
39168975 |
ccttcctgctgcaattttgattaccaagagtagttatg---atgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatcaa |
39169071 |
T |
|
| Q |
98 |
ctcttcttaaaagatctacaacaagacact |
127 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
39169072 |
ctctttttaaaagatctacaacaagacact |
39169101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 1163288 - 1163224
Alignment:
| Q |
384 |
acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaggttatgtgtg |
448 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1163288 |
acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtg |
1163224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 1850346 - 1850443
Alignment:
| Q |
348 |
tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaaca |
437 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1850346 |
tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaaca |
1850443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
| Q |
350 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
431 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39880327 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
39880405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
| Q |
350 |
tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
431 |
Q |
| |
|
|||||||| || |||||||||| || ||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40418782 |
tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
40418860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 39400042 - 39400084
Alignment:
| Q |
73 |
ggataagtgggaatctgattatcaactcttcttaaaagatcta |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39400042 |
ggataagtggcaatctgattatcaactcttcttagaagatcta |
39400084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
| Q |
378 |
cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt |
431 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38988229 |
cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt |
38988282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25912250 - 25912122
Alignment:
| Q |
1 |
ccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25912250 |
ccttcatgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactc |
25912154 |
T |
|
| Q |
101 |
ttcttaaaagatctacaacaagacactaaact |
132 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||| |
|
|
| T |
25912153 |
ttcttaaattatctacagcaagaccctaaact |
25912122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
| Q |
208 |
tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
307 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | ||||||||||||| |||||||| |
|
|
| T |
44444543 |
tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa |
44444444 |
T |
|
| Q |
308 |
ccaaaa----caaggaagatgcttttcatttattagcttttttctattt |
352 |
Q |
| |
|
| |||| ||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
44444443 |
cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt |
44444395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
| Q |
212 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
307 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | ||||||||||||| ||||||||| |
|
|
| T |
25912046 |
agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa |
25911951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 44444674 - 44444614
Alignment:
| Q |
62 |
gttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaag |
122 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
44444674 |
gttgttgttcaggataaattggaatctgattataaacttttcttaaaatatctaaaacaag |
44444614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
| Q |
395 |
tgcaatttgcaatttctgtttgatatttatgtttatt |
431 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
25911821 |
tgcagtttgcaatttctgtttgatacttatgtttatt |
25911785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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