View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0267_low_31 (Length: 217)
Name: NF0267_low_31
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0267_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 34796042 - 34795908
Alignment:
| Q |
1 |
tcttttaaagtgagtgtatannnnnnncaatctttagaatgactatg------attgattctaaagatgtataattgattttaatatatttgtttgttgt |
94 |
Q |
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| T |
34796042 |
tcttttaaagtgagtgtatatttgtttcaatctttagaatgactatgtctatgattgattctaaagatgtataattgattttaatatatttgtttgttgt |
34795943 |
T |
|
| Q |
95 |
cgagtaaagttgaagttaattttacttgaagttga |
129 |
Q |
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| T |
34795942 |
cgagtaaagttgaagttaattttacttgaagttga |
34795908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 22310825 - 22310787
Alignment:
| Q |
48 |
attgattctaaagatgtataattgattttaatatatttg |
86 |
Q |
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| T |
22310825 |
attgattctaaagatgtataattgattttgatatgtttg |
22310787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 37056118 - 37056168
Alignment:
| Q |
48 |
attgattctaaagatgtataattgattttaatatatttgtttgttgtcgag |
98 |
Q |
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|||||||||||||| |||||||||||| |||||| |||| |||| |||||| |
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| T |
37056118 |
attgattctaaagacgtataattgattataatatgtttgattgtggtcgag |
37056168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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