View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0267_low_37 (Length: 208)

Name: NF0267_low_37
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0267_low_37
NF0267_low_37
[»] chr4 (15 HSPs)
chr4 (1-137)||(2467612-2467748)
chr4 (23-129)||(2477658-2477761)
chr4 (15-128)||(2519312-2519425)
chr4 (5-70)||(5101938-5102003)
chr4 (12-70)||(2525945-2526003)
chr4 (18-73)||(2625296-2625351)
chr4 (10-66)||(2547613-2547669)
chr4 (15-73)||(2460671-2460729)
chr4 (11-65)||(5106216-5106270)
chr4 (15-71)||(2367597-2367653)
chr4 (12-67)||(2536682-2536737)
chr4 (11-70)||(5035810-5035869)
chr4 (15-70)||(12126963-12127018)
chr4 (11-69)||(2486430-2486488)
chr4 (21-70)||(12124907-12124956)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 2467748 - 2467612
Alignment:
Q  1 ggcggccgcggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467748 ggcggccgcggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatatt 2467649  T
Q  101 gatgaatatgggatgctagcttctaacctctctgctg 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  2467648 gatgaatatgggatgctagcttctaacctctctgctg 2467612  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 2477761 - 2477658
Alignment:
Q  23 tatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatgaatatgggatgctagctt 122  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||   |||||||||||||| | | || |||||| ||||||||||||||||||| ||    
T  2477761 tatttaccagaggagttgtgggagggcatcttcaaattcctcaacg---acggcgacaacaacttctacagcaatatggatgaatatgggatgctagatt 2477665  T
Q  123 ctaacct 129  Q
    |||||||    
T  2477664 ctaacct 2477658  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 2519425 - 2519312
Alignment:
Q  15 catgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaacggcgacaacaacatgttcaacaatattgatgaatatgggat 114  Q
    ||||||||||||||||  |||||||||||||||||||  |||| |||||||||||| | || ||| |||||   | |||||||||| |||| ||||||||    
T  2519425 catgttcatatttaccggaggagttatgggagcgcattgtcaagttcctcaacgacgagggagactacaaccactacaacaatattaatgagtatgggat 2519326  T
Q  115 gctagcttctaacc 128  Q
    ||||| || |||||    
T  2519325 gctaggttttaacc 2519312  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 5101938 - 5102003
Alignment:
Q  5 gccgcggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 70  Q
    ||||| |||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  5101938 gccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 5102003  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 2526003 - 2525945
Alignment:
Q  12 caacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 70  Q
    ||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  2526003 caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgac 2525945  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 2625296 - 2625351
Alignment:
Q  18 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaac 73  Q
    ||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  2625296 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgacaac 2625351  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2547669 - 2547613
Alignment:
Q  10 ggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaa 66  Q
    |||||||||| | ||||||||| | ||||||||||||| ||||||||||||||||||    
T  2547669 ggcaacatgtccctatttaccagatgagttatgggagcacatcttcaaattcctcaa 2547613  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 2460729 - 2460671
Alignment:
Q  15 catgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaac 73  Q
    |||||||| |||||||| ||||  |||||||| ||||||||||||||||| ||||||||    
T  2460729 catgttcacatttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaac 2460671  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 5106216 - 5106270
Alignment:
Q  11 gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctca 65  Q
    |||||| |||||||||||||  | |||||||||||| ||||||||||||||||||    
T  5106216 gcaacaggttcatatttaccggatgagttatgggagggcatcttcaaattcctca 5106270  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 2367597 - 2367653
Alignment:
Q  15 catgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgaca 71  Q
    |||||||||||||| || | ||||||||||||  |||||||||||| ||||||||||    
T  2367597 catgttcatatttaacagatgagttatgggagatcatcttcaaatttctcaacgaca 2367653  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 2536737 - 2536682
Alignment:
Q  12 caacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaac 67  Q
    ||||| |||||||||||||| |||||||||||||   |||||||||||| ||||||    
T  2536737 caacacgttcatatttaccagaggagttatgggaatacatcttcaaatttctcaac 2536682  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 5035869 - 5035810
Alignment:
Q  11 gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 70  Q
    |||||| ||||| |||||||| |||| ||||||||   ||||||||||||||||||||||    
T  5035869 gcaacacgttcaaatttaccagaggatttatgggaaaacatcttcaaattcctcaacgac 5035810  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 12127018 - 12126963
Alignment:
Q  15 catgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 70  Q
    ||||| ||||||||||  | ||||||||||||  ||||||||||||||||||||||    
T  12127018 catgtccatatttacctgatgagttatgggagatcatcttcaaattcctcaacgac 12126963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 2486488 - 2486430
Alignment:
Q  11 gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacga 69  Q
    |||||||| || ||||| ||| |||| ||||||||||| ||||| ||||||||||||||    
T  2486488 gcaacatgctcgtatttcccagaggaattatgggagcgaatctttaaattcctcaacga 2486430  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 12124956 - 12124907
Alignment:
Q  21 catatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 70  Q
    ||||||||||| | ||| ||||||||  ||||||||||||||||||||||    
T  12124956 catatttaccagatgagatatgggagatcatcttcaaattcctcaacgac 12124907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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