View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0267_low_7 (Length: 311)
Name: NF0267_low_7
Description: NF0267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0267_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 837957 - 838229
Alignment:
| Q |
10 |
caatagagtggaggaaattggatctaatgataataaattctggtcgaaggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttct |
109 |
Q |
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| T |
837957 |
caatagagtagaggaaattggatctaatgataataaattatggtcgaaggctaaggattactttgaaagtttggtttcaattcattgaaaatgagtttct |
838056 |
T |
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| Q |
110 |
cttccacatatatattattacttgtttgaatttatgttacatgtatgttcctaaaatccttatcagtttataataatatatattgttcaaaatattgtgt |
209 |
Q |
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| T |
838057 |
catccacatatatattattacttgtttgaatttatgttacatgtatgttcctaaaatccttatcagtttataataatatatattgttcaaaatattgtgt |
838156 |
T |
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| Q |
210 |
gatggcttatccgcttaattaaggtacttagttacataatagagttgcacttaatataccaaaaggtgaagag |
282 |
Q |
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| T |
838157 |
gatggcttatccgcttaattaaggtacttagttacataatagagttgcacttaatataccaaaaggtgaagag |
838229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 829474 - 829339
Alignment:
| Q |
10 |
caatagagtggaggaaattggatctaatgataataaattctggtcgaaggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttct |
109 |
Q |
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| T |
829474 |
caatagagtagagaaaattggaattaatgataatatattctggtcggaagctaaggattac-ttgaaagtttggtttcgattctatgaaagtgagtttct |
829376 |
T |
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| Q |
110 |
cttccacatatatattattacttgtttgaatttatgttacatgt |
153 |
Q |
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| T |
829375 |
ctttcaca-------tatgacttgtttgaatttatgttacatgt |
829339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 10482452 - 10482528
Alignment:
| Q |
64 |
ggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatatatattattacttgtttgaatttatgtt |
147 |
Q |
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| T |
10482452 |
ggattacgttgaaagtttggtttcgactcattgaaagtgagtttctcttccaca-------tattacttgtttgaatttatgtt |
10482528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 10468313 - 10468369
Alignment:
| Q |
64 |
ggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatat |
120 |
Q |
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| T |
10468313 |
ggattacgttgaaagtttggttttgactcattgaaagtgagtttctcttccacatat |
10468369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 10475459 - 10475540
Alignment:
| Q |
39 |
ataataaattctggtcgaaggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatat |
120 |
Q |
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| T |
10475459 |
ataatatattctggttgcatgccaaggattacgttgaaagtttagtttcgacacgttgaaagtgagtttctcttccacatat |
10475540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 25915111 - 25915057
Alignment:
| Q |
58 |
ggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttctctt |
112 |
Q |
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| T |
25915111 |
ggctaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt |
25915057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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